LXL04_006469 | RubberDandelionOmics

Gene overview

LXL04_006469

Reference: OH-1004 Chr: Chr02 Coordinates: 11648652-11650699 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1023 bp · LXL04_006469|LXL04_006469|OH1004|cDNA

ATGAGGCGAACGAGATTAGGGAGAGGTAAAaccgagagagggagagggtTGCATTGGGCTGAGGCCAGAACATTctactcgccggaaaactcccTGCCTGCCGGTTTTCAGTCGCCGGAACATGCTACTCGATTCACATACCTCCGATTTCGATTCTCAAGTTTTTCCATCAATTTTGCTTGCATGGCGATCAACTTCCTTTGGCATTTATGGCTACCTCACTTTCACAAAATATGGTTTTGCTTTTCTCTCAGGGAACA...

CDS

Download CDS FASTA

1023 bp · LXL04_006469|LXL04_006469|OH1004|CDS

ATGAGGCGAACGAGATTAGGGAGAGGTAAAACCGAGAGAGGGAGAGGGTTGCATTGGGCTGAGGCCAGAACATTCTACTCGCCGGAAAACTCCCTGCCTGCCGGTTTTCAGTCGCCGGAACATGCTACTCGATTCACATACCTCCGATTTCGATTCTCAAGTTTTTCCATCAATTTTGCTTGCATGGCGATCAACTTCCTTTGGCATTTATGGCTACCTCACTTTCACAAAATATGGTTTTGCTTTTCTCTCAGGGAACA...

Protein

Download Protein FASTA

340 aa · LXL04_006469|LXL04_006469|OH1004|PROTEIN

MRRTRLGRGKTERGRGLHWAEARTFYSPENSLPAGFQSPEHATRFTYLRFRFSSFSINFACMAINFLWHLWLPHFHKIWFCFSLREHSKNFKPEDMSTLIQGSVMPLLKVLQRSKCVYGGIPETRVHSSDSARVVFNTNGILYPDSVFDTDSHTSMVDGLGVAGWGVGGMEAEAAMLGQGISMVLPGVVVFELSGSLKNGVTATDLVLTVAKMLRKHGVVGNFVEFYGEGMSEIALPDRATIANMSKDTDLPDCIKCREW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006469`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006469

Location Chr02:11648652-11650699 (-)

Description Similar to ACO: Aconitate hydratase (Fragment)

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35830`	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.	No verified direct reference in this release
`At4g26970`	Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0191100`	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006469 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006097 glyoxylate cycle Biological Process

GO:0006099 tricarboxylic acid cycle Biological Process

GO:0006101 citrate metabolic process Biological Process

GO:0006102 isocitrate metabolic process Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:1990641 response to iron ion starvation Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT4G26970

ath:AT4G35830

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.353

Rank 1 · LXL04_006469 · OH-1004

Nucleus0.212

Rank 2 · LXL04_006469 · OH-1004

Mitochondrion0.199

Rank 3 · LXL04_006469 · OH-1004

Peroxisome0.153

Rank 4 · LXL04_006469 · OH-1004

Plastid0.089

Rank 5 · LXL04_006469 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00330.26Aconitase135-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006469	`PF00330.26`	Aconitase	135	247	1.2e-41	143.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q42560`	Arabidopsis thaliana	Aconitate hydratase 1	77.778%	Swiss-Prot	weak database homology
`Q94A28`	Arabidopsis thaliana	Aconitate hydratase 2, mitochondrial	79.310%	Swiss-Prot	weak database homology
`Q6YZX6`	Oryza sativa subsp. japonica	Putative aconitate hydratase, cytoplasmic	78.448%	Swiss-Prot	weak database homology

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