Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2148 bp · LXL04_006429|LXL04_006429|OH1004|cDNA
ATGGAAAGAATAGTCACAAAACCCTTCAAAAAACCTCCAAGAAACCCCCCTATAAAACCCCAATCACCAGACCCTTCTCCCCCACCAGAACCACCACCCGCCATTATGAACCGCCGCCCCTCCCACCCTTTCACGTTCCCAGAAACCAACTCCACCGTCCTCCCCAACCCCTCCACCTTCTTCTCCGCCAACCTCCTCTCCTCCCCTCTCCCCACAAACTCCTTCTTCCAGAACTTCGTCCTCAAAAACGGCGATCAACC...
2148 bp · LXL04_006429|LXL04_006429|OH1004|CDS
ATGGAAAGAATAGTCACAAAACCCTTCAAAAAACCTCCAAGAAACCCCCCTATAAAACCCCAATCACCAGACCCTTCTCCCCCACCAGAACCACCACCCGCCATTATGAACCGCCGCCCCTCCCACCCTTTCACGTTCCCAGAAACCAACTCCACCGTCCTCCCCAACCCCTCCACCTTCTTCTCCGCCAACCTCCTCTCCTCCCCTCTCCCCACAAACTCCTTCTTCCAGAACTTCGTCCTCAAAAACGGCGATCAACC...
Protein
Download Protein FASTA715 aa · LXL04_006429|LXL04_006429|OH1004|PROTEIN
MERIVTKPFKKPPRNPPIKPQSPDPSPPPEPPPAIMNRRPSHPFTFPETNSTVLPNPSTFFSANLLSSPLPTNSFFQNFVLKNGDQPEYIHPYLIKSSSSSLSISYPPLFSTAAFTYQIFNADLTIAAVNNPDPNQTHVISSFNDLSVTLDLPQSLRFYLVRGSPFLTCQVMQQTALSISTIHAILDFTPNSSRTRYKFNLNNGQTWVLYSSSPIDLTHEISKISSSPFSGVIRIAILPNPNLETVLDLFSSCYPVSGDA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006429 |
|---|---|
| TK1151 ID | TkA03G036410 |
| OH-1004 ID | LXL04_006429 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 82.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 69.510Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006429 |
|---|---|
| Location | Chr02:10531318-10533465 (-) |
| Description | Similar to ARB_01444: Probable endo-1,3(4)-beta-glucanase ARB_01444 (Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000272 polysaccharide catabolic process Biological Process GO:0006897 endocytosis Biological Process GO:0009603 detection of symbiotic fungus Biological Process GO:0030994 primary cell septum disassembly Biological Process GO:0042815 bipolar cell growth Biological Process GO:0044347 cell wall polysaccharide catabolic process Biological Process GO:0071555 cell wall organization Biological Process GO:0071998 ascospore release from ascus Biological Process GO:0097248 maintenance of protein location in cell cortex of cell tip Biological Process GO:0005576 extracellular region Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005938 cell cortex Cellular Component |
| KEGG gene cross-reference | abe:ARB_01444 spo:2541480 spo:2543379 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03639.20Glyco_hydro_8164-330 aaPF17652.8Glyco_hydro81C338-687 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006429 | PF03639.20 | Glyco_hydro_81 | 64 | 330 | 7.4e-59 | 200.3 |
| LXL04_006429 | PF17652.8 | Glyco_hydro81C | 338 | 687 | 2.1e-103 | 347.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.