LXL04_006360 | RubberDandelionOmics

Gene overview

LXL04_006360

Reference: OH-1004 Chr: Chr02 Coordinates: 8727682-8728398 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

717 bp · LXL04_006360|LXL04_006360|OH1004|cDNA

ATGCCATCTGATTCCTGCGATCACCGTCGAACTACCATCGCAAAGCCCCACCACATCGGTGGTTGTGGTGCTGTTGCTGGTGCAGGTGCACCGCCGCCTGAGCCGGAACACCTCCCTTGCCCACGTTGCGATTCTACAAACACCAAATTCTGTTACTACAACAACTACAACTTCTCTCAGCCGCGTCATTTCTGTAAGGCTTGCCGTCGTTACTGGACCCACGGTGGCACTCTTCGTGACATCCCCATCGGCGGTGGTAG...

CDS

Download CDS FASTA

717 bp · LXL04_006360|LXL04_006360|OH1004|CDS

ATGCCATCTGATTCCTGCGATCACCGTCGAACTACCATCGCAAAGCCCCACCACATCGGTGGTTGTGGTGCTGTTGCTGGTGCAGGTGCACCGCCGCCTGAGCCGGAACACCTCCCTTGCCCACGTTGCGATTCTACAAACACCAAATTCTGTTACTACAACAACTACAACTTCTCTCAGCCGCGTCATTTCTGTAAGGCTTGCCGTCGTTACTGGACCCACGGTGGCACTCTTCGTGACATCCCCATCGGCGGTGGTAG...

Protein

Download Protein FASTA

238 aa · LXL04_006360|LXL04_006360|OH1004|PROTEIN

MPSDSCDHRRTTIAKPHHIGGCGAVAGAGAPPPEPEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKNAKRSRVTSTGHNSSNISHSLEFRHMAPPTATPILIPFGGEHGGGLHFLGEGKSAVSMCESFTSLLNSTHGPGLFGLGVGGFEDGNFGFGRAIWPFAGIGDGGGSVQYATGGGGGGMIGGGHTWQLESGDGGGDCFTLPDLAISTPGMM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006360`
TK1151 ID	TkA06G156760
OH-1004 ID	LXL04_006360
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	56.200
Protein coverage (%)	TK1151 98.068 / OH-1004 99.160 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006360

Location Chr02:8727682-8728398 (-)

Description Similar to DOF3.4: Dof zinc finger protein DOF3.4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g50410`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g66940`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g51700`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At1g07640`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2006.02767.x Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006360 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0003002 regionalization Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009611 response to wounding Biological Process

GO:0009625 response to insect Biological Process

GO:0009733 response to auxin Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010439 regulation of glucosinolate biosynthetic process Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045787 positive regulation of cell cycle Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G07640

ath:AT1G51700

ath:AT3G50410

ath:AT5G66940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.957

Rank 1 · LXL04_006360 · OH-1004

Cytoplasm0.119

Rank 2 · LXL04_006360 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_006360 · OH-1004

Endoplasmic reticulum0.018

Rank 4 · LXL04_006360 · OH-1004

Plastid0.011

Rank 5 · LXL04_006360 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02701.21Zn_ribbon_Dof37-92 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006360	`PF02701.21`	Zn_ribbon_Dof	37	92	5.8e-34	116.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39088`	Arabidopsis thaliana	Dof zinc finger protein DOF3.4	48.899%	Swiss-Prot	moderate database homology
`Q9FGD6`	Arabidopsis thaliana	Dof zinc finger protein DOF5.8	44.589%	Swiss-Prot	moderate database homology
`O82155`	Arabidopsis thaliana	Dof zinc finger protein DOF1.7	63.529%	Swiss-Prot	weak database homology
`Q8L9V6`	Arabidopsis thaliana	Dof zinc finger protein DOF1.1	54.737%	Swiss-Prot	weak database homology

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