LXL04_006345 | RubberDandelionOmics

Gene overview

LXL04_006345

Reference: OH-1004 Chr: Chr02 Coordinates: 8237228-8245026 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2925 bp · LXL04_006345|LXL04_006345|OH1004|cDNA

ATGGCTAACAAGTTTCTTCCCACTACCTACCAAATTAAAAAGCGGTTAAGACGAAACCGTCATCCCATCTTCGTTAGCTCACGCAACTTTCAGTTCGAGGCAATTAATTATTTACAGAGGAAGGTATCTGTCGAGATGATTGCACCAAACGCTAACGACGTAGCTTTAGGAGAAGTAATGGTGGATTTACTGAATGCTGTAGTAGTACAAACTAAAAGAACCGCCAATTTTAGAACTCTACTCAAGCGACTGGAGAAAAC...

CDS

Download CDS FASTA

2925 bp · LXL04_006345|LXL04_006345|OH1004|CDS

ATGGCTAACAAGTTTCTTCCCACTACCTACCAAATTAAAAAGCGGTTAAGACGAAACCGTCATCCCATCTTCGTTAGCTCACGCAACTTTCAGTTCGAGGCAATTAATTATTTACAGAGGAAGGTATCTGTCGAGATGATTGCACCAAACGCTAACGACGTAGCTTTAGGAGAAGTAATGGTGGATTTACTGAATGCTGTAGTAGTACAAACTAAAAGAACCGCCAATTTTAGAACTCTACTCAAGCGACTGGAGAAAAC...

Protein

Download Protein FASTA

974 aa · LXL04_006345|LXL04_006345|OH1004|PROTEIN

MANKFLPTTYQIKKRLRRNRHPIFVSSRNFQFEAINYLQRKVSVEMIAPNANDVALGEVMVDLLNAVVVQTKRTANFRTLLKRLEKTLRNIEPIFYGIERLRKVLYYYPENETKLFIFYVANGREVVLECSNIKCWNVYKKFLHANKLIALDNMLLRFFQTENMSLNRRSLFEIYALGDKMDQVLTAVTKQTSGLVSDSCSVPGMPDVIIGLDSHLQNLKQILLKDDTHVLTVSAPGGCGKTTLTKMLCHDNEIKDIFGD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006345`
TK1151 ID	TkA03G027660
OH-1004 ID	LXL04_006345
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.400
Protein coverage (%)	TK1151 97.436 / OH-1004 62.423 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006345

Location Chr02:8237228-8245026 (-)

Description Similar to At5g66900: Probable disease resistance protein At5g66900

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66900`	Probable disease resistance protein.	No verified direct reference in this release
`At5g66910`	Probable disease resistance protein.	No verified direct reference in this release
`At4g33300`	Probable disease resistance protein.	No verified direct reference in this release
`At5g04720`	Probable disease resistance protein.	No verified direct reference in this release
`At1g33560`	Disease resistance (R) protein that mediates resistance against Hyaloperonospora parasitica in a salicylic acid-dependent manner.	Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens.2003 · DOI: 10.1094/mpmi.2003.16.8.669

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006345 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0051707 response to other organism Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0048046 apoplast Cellular Component

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G33560

ath:AT4G33300

ath:AT5G04720

ath:AT5G66900

ath:AT5G66910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.409

Rank 1 · LXL04_006345 · OH-1004

Cytoplasm0.295

Rank 2 · LXL04_006345 · OH-1004

Nucleus0.164

Rank 3 · LXL04_006345 · OH-1004

Endoplasmic reticulum0.128

Rank 4 · LXL04_006345 · OH-1004

Lysosome / Vacuole0.088

Rank 5 · LXL04_006345 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05659.17RPW855-162 aa

PF00931.29NB-ARC214-377 aa

PF13401.13AAA_22229-320 aa

PF23598.2LRR_14615-724 aa

PF23286.1LRR_13692-776 aa

PF25019.1LRR_R13L1-DRL21693-751 aa

PF23598.2LRR_14712-773 aa

PF23598.2LRR_14760-824 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006345	`PF05659.17`	RPW8	55	162	3.1e-21	76.2
LXL04_006345	`PF00931.29`	NB-ARC	214	377	1e-22	81.3
LXL04_006345	`PF13401.13`	AAA_22	229	320	2.2e-08	35.2
LXL04_006345	`PF23598.2`	LRR_14	615	724	7.7e-17	61.8
LXL04_006345	`PF23286.1`	LRR_13	692	776	3.3e-09	37.5
LXL04_006345	`PF25019.1`	LRR_R13L1-DRL21	693	751	4.3e-10	40.3
LXL04_006345	`PF23598.2`	LRR_14	712	773	7.7e-17	61.8
LXL04_006345	`PF23598.2`	LRR_14	760	824	7.7e-17	61.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKZ1`	Arabidopsis thaliana	Probable disease resistance protein At5g66900	39.173%	Swiss-Prot	moderate database homology
`Q9FKZ0`	Arabidopsis thaliana	Probable disease resistance protein At5g66910	37.636%	Swiss-Prot	moderate database homology
`Q9SZA7`	Arabidopsis thaliana	Probable disease resistance protein At4g33300	31.470%	Swiss-Prot	moderate database homology
`Q9LZ25`	Arabidopsis thaliana	Probable disease resistance protein At5g04720	30.049%	Swiss-Prot	moderate database homology
`Q9FW44`	Arabidopsis thaliana	Disease resistance protein ADR1	30.970%	Swiss-Prot	moderate database homology

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