LXL04_006265 | RubberDandelionOmics

Gene overview

LXL04_006265

Reference: OH-1004 Chr: Chr02 Coordinates: 5513066-5514106 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1041 bp · LXL04_006265|LXL04_006265|OH1004|cDNA

ATGGCAGCCTCTGATGCTTCTCTTTCATTATCATCCAAACCTACTTCAGAGGAAGAGCATCTAGCCCTCCTTTTGGACAAATACAAGAATAAGTTAACCACATTACCCAAACAGAAAGGGTGGATGGGTGAAACCTTTTACATGTATCAAGGCTTTTGGTATCGCTCCAGTAGCCCATTCTCAGTTCAGATGACAATGGCCATGCAAGACTCTTTCAAGCCTCATCCAACTGATATCTACTTACTCACACTACCAAAATC...

CDS

Download CDS FASTA

1041 bp · LXL04_006265|LXL04_006265|OH1004|CDS

ATGGCAGCCTCTGATGCTTCTCTTTCATTATCATCCAAACCTACTTCAGAGGAAGAGCATCTAGCCCTCCTTTTGGACAAATACAAGAATAAGTTAACCACATTACCCAAACAGAAAGGGTGGATGGGTGAAACCTTTTACATGTATCAAGGCTTTTGGTATCGCTCCAGTAGCCCATTCTCAGTTCAGATGACAATGGCCATGCAAGACTCTTTCAAGCCTCATCCAACTGATATCTACTTACTCACACTACCAAAATC...

Protein

Download Protein FASTA

346 aa · LXL04_006265|LXL04_006265|OH1004|PROTEIN

MAASDASLSLSSKPTSEEEHLALLLDKYKNKLTTLPKQKGWMGETFYMYQGFWYRSSSPFSVQMTMAMQDSFKPHPTDIYLLTLPKSGTTWVKALMFATVNRATYNHGNNTLLLTHPLLVSNPHKCVPYIEQEFIKKTPTHVQEKPNPCLHAPPRLFSTHIPYTSLPRLILDSGCRLVYLCRNPKDVMVSWYYFSNKFPHEILTPMTINEMFEVFVKGMVPYGPYWDHVKEYYNASCEHPTKILFLTYEVMKKDTMNQVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006265`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_006265

Location Chr02:5513066-5514106 (-)

Description Similar to SOT5: Cytosolic sulfotransferase 5

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g45070`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to specifically catalyze the sulfate conjugation of flavones and flavonols.	Biochemical and molecular characterization of flavonoid 7-sulfotransferase from Arabidopsis thaliana.2006 · DOI: 10.1016/j.plaphy.2006.10.004
`At2g03770`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	No verified direct reference in this release
`At2g03760`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the stereospecific sulfate conjugation of 24-epibrassinosteroids.	Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760).2007 · DOI: 10.1007/s00425-006-0413-y A stress-inducible sulphotransferase sulphonates salicylic acid and confers pathogen resistance in Arabidopsis.2010 · DOI: 10.1111/j.1365-3040.2010.02156.x
`At1g13420`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor.	Molecular and biochemical characterization of two brassinosteroid sulfotransferases from Arabidopsis, AtST4a (At2g14920) and AtST1 (At2g03760).2007 · DOI: 10.1007/s00425-006-0413-y
`At1g74100`	Sulfotransferase that utilizes 3'-phospho-5'-adenylyl sulfate (PAPS) as sulfonate donor to catalyze the sulfate conjugation of desulfo-glucosinolates (dsGSs), the final step in the biosynthesis of the glucosinolate core structure.	Desulfoglucosinolate sulfotransferases from Arabidopsis thaliana catalyze the final step in the biosynthesis of the glucosinolate core structure.2004 · DOI: 10.1074/jbc.m407681200 The three desulfoglucosinolate sulfotransferase proteins in Arabidopsis have different substrate specificities and are differentially expressed.2006 · DOI: 10.1111/j.1742-4658.2005.05048.x Kinetics and substrate specificities of desulfo-glucosinolate sulfotransferases in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1399-3054.2008.01182.x Modulation of sulfur metabolism enables efficient glucosinolate engineering.2011 · DOI: 10.1186/1472-6750-11-12

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006265 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009806 lignan metabolic process Biological Process

GO:0009812 flavonoid metabolic process Biological Process

GO:0016131 brassinosteroid metabolic process Biological Process

GO:0019761 glucosinolate biosynthetic process Biological Process

GO:0032260 response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0051923 sulfation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G13420

ath:AT1G74100

ath:AT2G03760

ath:AT2G03770

ath:AT3G45070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.848

Rank 1 · LXL04_006265 · OH-1004

Nucleus0.240

Rank 2 · LXL04_006265 · OH-1004

Peroxisome0.050

Rank 3 · LXL04_006265 · OH-1004

Endoplasmic reticulum0.048

Rank 4 · LXL04_006265 · OH-1004

Mitochondrion0.037

Rank 5 · LXL04_006265 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00685.34Sulfotransfer_176-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006265	`PF00685.34`	Sulfotransfer_1	76	342	1.5e-67	228.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1V2`	Arabidopsis thaliana	Cytosolic sulfotransferase 5	41.768%	Swiss-Prot	moderate database homology
`Q9ZPQ5`	Arabidopsis thaliana	Cytosolic sulfotransferase 13	40.923%	Swiss-Prot	moderate database homology
`P52839`	Arabidopsis thaliana	Cytosolic sulfotransferase 12	41.159%	Swiss-Prot	moderate database homology
`Q9FX56`	Arabidopsis thaliana	Cytosolic sulfotransferase 8	40.317%	Swiss-Prot	moderate database homology
`Q9C9D0`	Arabidopsis thaliana	Cytosolic sulfotransferase 16	41.486%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card