LXL04_006188 | RubberDandelionOmics

Gene overview

LXL04_006188

Reference: OH-1004 Chr: Chr02 Coordinates: 3414580-3417050 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1536 bp · LXL04_006188|LXL04_006188|OH1004|cDNA

ATGACAATCAATAAATCATGTTTAGTTTTAATAGTGGTTGCGGGGATGGAAAGGTTTGTGTTCAAAGGATTAGCGTGCAATTTGGTGACGTATTTGACGGATGTTATGAAGATGAGCAACTCTTCGGCGGCTACAACTGTCAGTGTTTGGTCCGGTTTTACATCGATGTTGCCGTTAGTGGTGGCCCCTTTGGTGGACTCTTATTGGGATCACTATTCGACCATCTTAGCATCATCTTTTGTGTATTTTCTGGGCCTTTT...

CDS

Download CDS FASTA

1536 bp · LXL04_006188|LXL04_006188|OH1004|CDS

ATGACAATCAATAAATCATGTTTAGTTTTAATAGTGGTTGCGGGGATGGAAAGGTTTGTGTTCAAAGGATTAGCGTGCAATTTGGTGACGTATTTGACGGATGTTATGAAGATGAGCAACTCTTCGGCGGCTACAACTGTCAGTGTTTGGTCCGGTTTTACATCGATGTTGCCGTTAGTGGTGGCCCCTTTGGTGGACTCTTATTGGGATCACTATTCGACCATCTTAGCATCATCTTTTGTGTATTTTCTGGGCCTTTT...

Protein

Download Protein FASTA

511 aa · LXL04_006188|LXL04_006188|OH1004|PROTEIN

MTINKSCLVLIVVAGMERFVFKGLACNLVTYLTDVMKMSNSSAATTVSVWSGFTSMLPLVVAPLVDSYWDHYSTILASSFVYFLGLLALVSSTLNKQNPSPSSLYSSLYLISLGQGGYNPSLQAFGANQIEPQDELPTTENDHSPNNKSRFFQWWYFGICSGSLLGVSIMPNVQDLVGWGLGFAVSAMVMVMSISLFLCSGRLYSRKQDKRVHIDVSFFEKIIRAVKRLKSSEKPNLVEIELEENTLCLQEDNNGGEARC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006188`
TK1151 ID	TkA03G016240
OH-1004 ID	LXL04_006188
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006188

Location Chr02:3414580-3417050 (-)

Description Similar to NPF5.8: Protein NRT1/ PTR FAMILY 5.8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g14940`	Protein NRT1/ PTR FAMILY 5.8.	No verified direct reference in this release
`At3g01350`	Protein NRT1/ PTR FAMILY 5.9.	No verified direct reference in this release
`At1g22540`	Protein NRT1/ PTR FAMILY 5.10.	No verified direct reference in this release
`At1g72120`	Protein NRT1/ PTR FAMILY 5.14.	No verified direct reference in this release
`At1g72125`	Protein NRT1/ PTR FAMILY 5.13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006188 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

GO:0042937 tripeptide transmembrane transporter activity Molecular Function

GO:0071916 dipeptide transmembrane transporter activity Molecular Function

GO:0080054 low-affinity nitrate transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G22540

ath:AT1G72120

ath:AT1G72125

ath:AT3G01350

ath:AT5G14940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.695

Rank 1 · LXL04_006188 · OH-1004

Endoplasmic reticulum0.108

Rank 2 · LXL04_006188 · OH-1004

Lysosome / Vacuole0.094

Rank 3 · LXL04_006188 · OH-1004

Cytoplasm0.076

Rank 4 · LXL04_006188 · OH-1004

Mitochondrion0.039

Rank 5 · LXL04_006188 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_118-130 aa

PF00854.28PTR272-463 aa

PF07690.22MFS_1145-451 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006188	`PF07690.22`	MFS_1	18	130	2.3e-15	57.1
LXL04_006188	`PF00854.28`	PTR2	72	463	7.3e-74	249.7
LXL04_006188	`PF07690.22`	MFS_1	145	451	2.3e-15	57.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFR1`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.8	51.970%	Swiss-Prot	strong database homology
`Q9SRI2`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.9	51.654%	Swiss-Prot	strong database homology
`Q0WP01`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.10	37.547%	Swiss-Prot	moderate database homology
`Q8VZE2`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.14	37.761%	Swiss-Prot	moderate database homology
`Q0WSZ6`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.13	37.803%	Swiss-Prot	moderate database homology

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