LXL04_006181 | RubberDandelionOmics

Gene overview

LXL04_006181

Reference: OH-1004 Chr: Chr02 Coordinates: 3296355-3297546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

477 bp · LXL04_006181|LXL04_006181|OH1004|cDNA

ATGATTGGTGAAATTGCTAGTGGGCCCATGGCTGATTTCTTTGGTTGCAAAGGGGCACCAAGAATATCTACTGCTTTCTGTACAAGTGGGTGGCTAGCAAGATACTTTGCTCAGCTCATGATTTGTACAGGGGTATCTGTTGCCTTTATAATTGGAACAGTGCTGACATGGCGAATCTTGGCATTAACAGGATTGATCCATTGTGTTTTTCTATTAGTGGGGCTTTTCTTTGTACCAGAATCTCCTAGATGGCTCGTAAG...

CDS

Download CDS FASTA

477 bp · LXL04_006181|LXL04_006181|OH1004|CDS

ATGATTGGTGAAATTGCTAGTGGGCCCATGGCTGATTTCTTTGGTTGCAAAGGGGCACCAAGAATATCTACTGCTTTCTGTACAAGTGGGTGGCTAGCAAGATACTTTGCTCAGCTCATGATTTGTACAGGGGTATCTGTTGCCTTTATAATTGGAACAGTGCTGACATGGCGAATCTTGGCATTAACAGGATTGATCCATTGTGTTTTTCTATTAGTGGGGCTTTTCTTTGTACCAGAATCTCCTAGATGGCTCGTAAG...

Protein

Download Protein FASTA

158 aa · LXL04_006181|LXL04_006181|OH1004|PROTEIN

MIGEIASGPMADFFGCKGAPRISTAFCTSGWLARYFAQLMICTGVSVAFIIGTVLTWRILALTGLIHCVFLLVGLFFVPESPRWLVRVDLYAHAFVAATFLDPFALLLGAVCLGEGLDCRILIYLRSYDIVLSLTFSVEPNSKQLFSITNVTIFKENV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006181`
TK1151 ID	TkA03G015860
OH-1004 ID	LXL04_006181
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	97.800
Protein coverage (%)	TK1151 41.818 / OH-1004 29.114 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006181

Location Chr02:3296355-3297546 (-)

Description Similar to At2g48020: Sugar transporter ERD6-like 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g48020`	Sugar transporter.	No verified direct reference in this release
`At5g18840`	Sugar transporter.	No verified direct reference in this release
`At3g20460`	Sugar transporter.	No verified direct reference in this release
`At1g54730`	Sugar transporter.	No verified direct reference in this release
`At3g05155`	Sugar transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006181 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006829 zinc ion transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

GO:0051119 sugar transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G54730

ath:AT2G48020

ath:AT3G05155

ath:AT3G20460

ath:AT5G18840

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.377

Rank 1 · LXL04_006181 · OH-1004

Cytoplasm0.139

Rank 2 · LXL04_006181 · OH-1004

Plastid0.105

Rank 3 · LXL04_006181 · OH-1004

Mitochondrion0.098

Rank 4 · LXL04_006181 · OH-1004

Nucleus0.086

Rank 5 · LXL04_006181 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr37-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006181	`PF00083.31`	Sugar_tr	37	89	1.3e-06	28.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P93051`	Arabidopsis thaliana	Sugar transporter ERD6-like 7	43.939%	Swiss-Prot	moderate database homology
`Q8LBI9`	Arabidopsis thaliana	Sugar transporter ERD6-like 16	37.405%	Swiss-Prot	moderate database homology
`Q9LTP6`	Arabidopsis thaliana	Putative sugar transporter ERD6-like 13	32.824%	Swiss-Prot	moderate database homology
`Q3ECP7`	Arabidopsis thaliana	Sugar transporter ERD6-like 5	33.333%	Swiss-Prot	moderate database homology
`Q7XA64`	Arabidopsis thaliana	Sugar transporter ERD6-like 9	35.878%	Swiss-Prot	moderate database homology

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