LXL04_006133 | RubberDandelionOmics

Gene overview

LXL04_006133

Reference: OH-1004 Chr: Chr02 Coordinates: 2055727-2058424 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1023 bp · LXL04_006133|LXL04_006133|OH1004|cDNA

ATGGCTGAAGTGATTCAGAGGGAGCAGCAACAGCTGAATCTAGTCATTAGAAAAGCATGTTTTAGTCTGCCAACAGCTTGCCCTTCGTGCTTGCCTGTCTACATCTATCTCAAATTCGCAAATGTTCCTTTCGATTCGTGTTACAATCTCACTTACCCTGATTCCGATCAAATTCCTTACGTTGACTCCGATACATACGTCGCTTACAACAATGAGAAAGGTGGTGTAATTGAAAGTTTGAAACAAGATAATATCGCTAA...

CDS

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1023 bp · LXL04_006133|LXL04_006133|OH1004|CDS

ATGGCTGAAGTGATTCAGAGGGAGCAGCAACAGCTGAATCTAGTCATTAGAAAAGCATGTTTTAGTCTGCCAACAGCTTGCCCTTCGTGCTTGCCTGTCTACATCTATCTCAAATTCGCAAATGTTCCTTTCGATTCGTGTTACAATCTCACTTACCCTGATTCCGATCAAATTCCTTACGTTGACTCCGATACATACGTCGCTTACAACAATGAGAAAGGTGGTGTAATTGAAAGTTTGAAACAAGATAATATCGCTAA...

Protein

Download Protein FASTA

340 aa · LXL04_006133|LXL04_006133|OH1004|PROTEIN

MAEVIQREQQQLNLVIRKACFSLPTACPSCLPVYIYLKFANVPFDSCYNLTYPDSDQIPYVDSDTYVAYNNEKGGVIESLKQDNIANLDSEVQTLPEWVSTIAMINSWLSDAMLYELWIGSDGSSANKIYYSDLPWPIGKLLYLKQVHNVKQLLGISKETAERREEEIYRRATIAYQALSTKLGEESFFFDNRQVLTSCFYSKSFRFLPSSLDAIFLGHALITLYALPETSVLRGKLLEQPFLVIYADKHKAQLLDSESS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006133`
TK1151 ID	TkA03G010580
OH-1004 ID	LXL04_006133
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006133

Location Chr02:2055727-2058424 (-)

Description Similar to MTX1: Mitochondrial outer membrane import complex protein METAXIN

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g19080`	Involved in transport of proteins into the mitochondrion.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006133 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006626 protein targeting to mitochondrion Biological Process

GO:0006839 mitochondrial transport Biological Process

GO:0007007 inner mitochondrial membrane organization Biological Process

GO:0015031 protein transport Biological Process

GO:0045040 protein insertion into mitochondrial outer membrane Biological Process

GO:0070096 mitochondrial outer membrane translocase complex assembly Biological Process

GO:0001401 SAM complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0140275 MIB complex Cellular Component

KEGG gene cross-reference

ath:AT2G19080

hsa:10651

ssc:733591

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.341

Rank 1 · LXL04_006133 · OH-1004

Endoplasmic reticulum0.256

Rank 2 · LXL04_006133 · OH-1004

Cytoplasm0.184

Rank 3 · LXL04_006133 · OH-1004

Nucleus0.133

Rank 4 · LXL04_006133 · OH-1004

Golgi apparatus0.094

Rank 5 · LXL04_006133 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17172.11GST_N_428-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006133	`PF17172.11`	GST_N_4	28	121	2.1e-16	61.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O64471`	Arabidopsis thaliana	Mitochondrial outer membrane import complex protein METAXIN	52.050%	Swiss-Prot	strong database homology

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