Gene Card
Gene overview
cDNA / CDS / Protein Sequences
930 bp · LXL04_006123|LXL04_006123|OH1004|cDNA
ATGTTACCAGCCGACCCCACAAAAAAACCATCCTTCAACCGCCACATCAGCAATGGAGACCTAGTAATAGTATACGAAAAACACGACACCATGAAGGCAGTAAAAGTATCCGAAACCTCTCTTCTCGAAAACCGTTTCGGCGTCTTTAAGCATTCAGACTGGATCGGGAAACCATTTGGGTCCAAAGTTTCTAGCCACAAGGGCGGTTTCGTCTTTTTACTTGCTCCAACTCCTGAACTATGGACTTTGGTTTTAAGTCA...
930 bp · LXL04_006123|LXL04_006123|OH1004|CDS
ATGTTACCAGCCGACCCCACAAAAAAACCATCCTTCAACCGCCACATCAGCAATGGAGACCTAGTAATAGTATACGAAAAACACGACACCATGAAGGCAGTAAAAGTATCCGAAACCTCTCTTCTCGAAAACCGTTTCGGCGTCTTTAAGCATTCAGACTGGATCGGGAAACCATTTGGGTCCAAAGTTTCTAGCCACAAGGGCGGTTTCGTCTTTTTACTTGCTCCAACTCCTGAACTATGGACTTTGGTTTTAAGTCA...
Protein
Download Protein FASTA309 aa · LXL04_006123|LXL04_006123|OH1004|PROTEIN
MLPADPTKKPSFNRHISNGDLVIVYEKHDTMKAVKVSETSLLENRFGVFKHSDWIGKPFGSKVSSHKGGFVFLLAPTPELWTLVLSHRTQILYIADISFVVMYLELVPGCVVLESGTGSGSLTTSLARAVAPIGHVYTFDFHEQRSIAAREDFEKTGLTDLVTVGVRDIQGEGFPKDLMKRADAVFLDLPQPWLAIPSAGEMLKEDGILCSFSPCIEQVQRSSETLASKFTDIRTFEVLLRTYEVKEAKIDQCQTEEGGP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006123 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006123 |
|---|---|
| Location | Chr02:2008879-2011392 (+) |
| Description | Similar to Trmt61a: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0030488 tRNA methylation Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0031515 tRNA (m1A) methyltransferase complex Cellular Component GO:0061953 mRNA (adenine-N1-)-methyltransferase activity Molecular Function GO:0140098 catalytic activity, acting on RNA Molecular Function GO:0160107 tRNA (adenine(58)-N1)-methyltransferase activity Molecular Function |
| KEGG gene cross-reference | bta:510283 ddi:DDB_G0271512 hsa:115708 mmu:328162 rno:314462 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF08704.17GCD1469-304 aaPF13847.13Methyltransf_31108-226 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006123 | PF08704.17 | GCD14 | 69 | 304 | 2.6e-98 | 329.4 |
| LXL04_006123 | PF13847.13 | Methyltransf_31 | 108 | 226 | 2.5e-07 | 31.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.