LXL04_006076 | RubberDandelionOmics

Gene overview

LXL04_006076

Reference: OH-1004 Chr: Chr02 Coordinates: 1399816-1401068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

783 bp · LXL04_006076|LXL04_006076|OH1004|cDNA

ATGGGGAGACAGCCATGTTGTGATCGAGCGGGATTGAAGAGAGGGCCATGGACTATTGAAGAAGATCGAAGGCTTATGAATTTTATCATCAACAATGGCATCCAATGCTGGCGAATGGTTCCTAAACTTGCAGGTTTGCTAAGATGTGGGAAGAGTTGTAGGTTGAGATGGATTAATTATCTAAGGCCGGATCTCAAAAGAGGGACACTATCAGAAGCCGAAGAGGATCAGATTATTGAACTTCATGCACGTCTTGGAAA...

CDS

Download CDS FASTA

783 bp · LXL04_006076|LXL04_006076|OH1004|CDS

ATGGGGAGACAGCCATGTTGTGATCGAGCGGGATTGAAGAGAGGGCCATGGACTATTGAAGAAGATCGAAGGCTTATGAATTTTATCATCAACAATGGCATCCAATGCTGGCGAATGGTTCCTAAACTTGCAGGTTTGCTAAGATGTGGGAAGAGTTGTAGGTTGAGATGGATTAATTATCTAAGGCCGGATCTCAAAAGAGGGACACTATCAGAAGCCGAAGAGGATCAGATTATTGAACTTCATGCACGTCTTGGAAA...

Protein

Download Protein FASTA

260 aa · LXL04_006076|LXL04_006076|OH1004|PROTEIN

MGRQPCCDRAGLKRGPWTIEEDRRLMNFIINNGIQCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGTLSEAEEDQIIELHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKKLKLLGVDPNTHKQIDEEQKQAMGPNNEQCNSVFKVTSNNGDTQVDCTKMDERRQKDDIKSHNHYDMVFKNSEMDLRTNMHQEKSSSVSTSHSQSYSYEDSMNPNKESSVIDVDYSLQQWVDGLDSLLLWDCFNQQDDTFFLLGNT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006076`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006076

Location Chr02:1399816-1401068 (+)

Description Similar to MYB315: Myb-related protein 315

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g66230`	Transcription factor that acts as a positive regulator of abscisic acid (ABA) signaling in response to salt stress.	An Arabidopsis R2R3-MYB transcription factor, AtMYB20, negatively regulates type 2C serine/threonine protein phosphatases to enhance salt tolerance.2013 · DOI: 10.1016/j.febslet.2013.04.028
`At1g35515`	Transcription activator.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006076 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009094 L-phenylalanine biosynthetic process Biological Process

GO:0009423 chorismate biosynthetic process Biological Process

GO:0010468 regulation of gene expression Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0030154 cell differentiation Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0051707 response to other organism Biological Process

GO:0080090 regulation of primary metabolic process Biological Process

KEGG gene cross-reference

ath:AT1G35515

ath:AT1G66230

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.928

Rank 1 · LXL04_006076 · OH-1004

Cytoplasm0.171

Rank 2 · LXL04_006076 · OH-1004

Cell membrane0.021

Rank 3 · LXL04_006076 · OH-1004

Mitochondrion0.021

Rank 4 · LXL04_006076 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_006076 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding14-61 aa

PF13921.13Myb_DNA-bind_617-76 aa

PF00249.38Myb_DNA-binding67-110 aa

PF13921.13Myb_DNA-bind_671-117 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006076	`PF00249.38`	Myb_DNA-binding	14	61	1e-31	109.5
LXL04_006076	`PF13921.13`	Myb_DNA-bind_6	17	76	3.3e-17	63.1
LXL04_006076	`PF00249.38`	Myb_DNA-binding	67	110	1e-31	109.5
LXL04_006076	`PF13921.13`	Myb_DNA-bind_6	71	117	3.3e-17	63.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9C7U7`	Arabidopsis thaliana	Transcription factor MYB20	71.942%	Swiss-Prot	moderate database homology
`Q9SDS8`	Arabidopsis thaliana	Transcription factor MYB8	58.108%	Swiss-Prot	moderate database homology

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