Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1143 bp · LXL04_006072|LXL04_006072|OH1004|cDNA
ATGGTGGACGAAGAGCCAAAACGGAGCTCTCCAAAACAATCTGAAAATGGAGAGAAGGGGAATTGTGTGTTCAGCCCTGGGTTTCGCTCTGTGGCAGCCATGGCAGGTTGGGACGAAGAAGCACTGTTAATGGCGTCCCTTGTCGTTGAAGATACGCCAGAGCGGGATACTAAACAGAAGAGACGCTCAGATCCGCTGTTCAAAACTCCACCTACTAATTCTCGAAGAAAACGCAGAGATCAGAGGAAGAGTCCTGTTTC...
1143 bp · LXL04_006072|LXL04_006072|OH1004|CDS
ATGGTGGACGAAGAGCCAAAACGGAGCTCTCCAAAACAATCTGAAAATGGAGAGAAGGGGAATTGTGTGTTCAGCCCTGGGTTTCGCTCTGTGGCAGCCATGGCAGGTTGGGACGAAGAAGCACTGTTAATGGCGTCCCTTGTCGTTGAAGATACGCCAGAGCGGGATACTAAACAGAAGAGACGCTCAGATCCGCTGTTCAAAACTCCACCTACTAATTCTCGAAGAAAACGCAGAGATCAGAGGAAGAGTCCTGTTTC...
Protein
Download Protein FASTA380 aa · LXL04_006072|LXL04_006072|OH1004|PROTEIN
MVDEEPKRSSPKQSENGEKGNCVFSPGFRSVAAMAGWDEEALLMASLVVEDTPERDTKQKRRSDPLFKTPPTNSRRKRRDQRKSPVSLPVTVLDLDEEVCSKEEIVEEKKEQKIDVDINSKKDEKSNESTSESSSIPCIDRLREELSCAVSSSYLIIFPLLTTSCGHSFCKKCLRSAADKCGKRCPKCRQLISNGRSCTINTVLWNTIQLLFPQEIEARKVVAGGCSNANLQSPPSRRRSQYRSVIEALNSPEGEQLSLE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_006072 |
|---|---|
| TK1151 ID | TkA03G008130 |
| OH-1004 ID | LXL04_006072 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_006072 |
|---|---|
| Location | Chr02:1350762-1352361 (-) |
| Description | Protein of unknown function |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006302 double-strand break repair Biological Process GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006974 DNA damage response Biological Process GO:0010212 response to ionizing radiation Biological Process GO:0010508 positive regulation of autophagy Biological Process GO:0016567 protein ubiquitination Biological Process GO:0032461 positive regulation of protein oligomerization Biological Process GO:0032728 positive regulation of interferon-beta production Biological Process GO:0034244 negative regulation of transcription elongation by RNA polymerase II Biological Process GO:0045739 positive regulation of DNA repair Biological Process GO:0060337 type I interferon-mediated signaling pathway Biological Process GO:0070534 protein K63-linked ubiquitination Biological Process |
| KEGG gene cross-reference | bta:613812 hsa:201292 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00097.32zf-C3HC4160-188 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_006072 | PF00097.32 | zf-C3HC4 | 160 | 188 | 1e-05 | 26.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.