LXL04_005819 | RubberDandelionOmics

Gene overview

LXL04_005819

Reference: OH-1004 Chr: Chr01 Coordinates: 174002563-174003062 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

255 bp · LXL04_005819|LXL04_005819|OH1004|cDNA

ATGTATAGCAGGAATTCTGACCACTACATCGACCGAAGGTTTGCGATATACTGCAACACGAAACCGATCCTGACTACGCAGCCTCATTGGTGCTTGAATCAAGAACCTGAGAAGGAGTTGGTACCCGGCGAACACAAAGAAGCTTTAGTTGCTGCCGATTACATGCCCGATATCATTCTCAGAGAGCAAGGTGTAATCGACGTCGCCCGACATCCCGATTGTGTGACTCTAGTCATGAAGTTTAGCTTTAGATAA

CDS

Download CDS FASTA

255 bp · LXL04_005819|LXL04_005819|OH1004|CDS

ATGTATAGCAGGAATTCTGACCACTACATCGACCGAAGGTTTGCGATATACTGCAACACGAAACCGATCCTGACTACGCAGCCTCATTGGTGCTTGAATCAAGAACCTGAGAAGGAGTTGGTACCCGGCGAACACAAAGAAGCTTTAGTTGCTGCCGATTACATGCCCGATATCATTCTCAGAGAGCAAGGTGTAATCGACGTCGCCCGACATCCCGATTGTGTGACTCTAGTCATGAAGTTTAGCTTTAGATAA

Protein

Download Protein FASTA

84 aa · LXL04_005819|LXL04_005819|OH1004|PROTEIN

MYSRNSDHYIDRRFAIYCNTKPILTTQPHWCLNQEPEKELVPGEHKEALVAADYMPDIILREQGVIDVARHPDCVTLVMKFSFR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005819`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005819

Location Chr01:174002563-174003062 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0106900`	Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADPH-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005819 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051484 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0030145 manganese ion binding Molecular Function

GO:0030604 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity Molecular Function

GO:0070402 NADPH binding Molecular Function

KEGG gene cross-reference

dosa:Os01g0106900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.369

Rank 1 · LXL04_005819 · OH-1004

Cytoplasm0.342

Rank 2 · LXL04_005819 · OH-1004

Mitochondrion0.128

Rank 3 · LXL04_005819 · OH-1004

Extracellular0.098

Rank 4 · LXL04_005819 · OH-1004

Plastid0.076

Rank 5 · LXL04_005819 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8W250`	Oryza sativa subsp. japonica	1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic	65.714%	Swiss-Prot	weak database homology

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