LXL04_005808 | RubberDandelionOmics

Gene overview

LXL04_005808

Reference: OH-1004 Chr: Chr01 Coordinates: 173793472-173795794 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1191 bp · LXL04_005808|LXL04_005808|OH1004|cDNA

ATGAAAGGCGGGTTTTCAGCGCCAGGTGATTACATCTACTTCAAGTCCCAGGTCCCTCTCCACAAGATCCCTATTGGTACAAAACAATGGAGATATTACGACTTTGGCCCTAAAGTAGTTCCTCCATTGATATGTCTTCCTGGTACTGCTGGTACAGCAGATGTCTACTACAAACAAATCATGTCACTCTCCATGAAGGGTTATCGAGTGATTTCTGTTGATATTCCTCGTGTATGGAACAATCAAGAATGGGTTCAAGC...

CDS

Download CDS FASTA

1191 bp · LXL04_005808|LXL04_005808|OH1004|CDS

ATGAAAGGCGGGTTTTCAGCGCCAGGTGATTACATCTACTTCAAGTCCCAGGTCCCTCTCCACAAGATCCCTATTGGTACAAAACAATGGAGATATTACGACTTTGGCCCTAAAGTAGTTCCTCCATTGATATGTCTTCCTGGTACTGCTGGTACAGCAGATGTCTACTACAAACAAATCATGTCACTCTCCATGAAGGGTTATCGAGTGATTTCTGTTGATATTCCTCGTGTATGGAACAATCAAGAATGGGTTCAAGC...

Protein

Download Protein FASTA

396 aa · LXL04_005808|LXL04_005808|OH1004|PROTEIN

MKGGFSAPGDYIYFKSQVPLHKIPIGTKQWRYYDFGPKVVPPLICLPGTAGTADVYYKQIMSLSMKGYRVISVDIPRVWNNQEWVQAFEKFLDVIDVHHIHLYGTSLGGFLALLFAQHRPRRVKSLVLSNAFLDTKYFSAAMPWAPVVRWTPSFLLKRYVLTGIPNGPHEPFIADSVDFVVAQVENLSREDLASRLTLTSDAASVGPLLISNTLITIMDTNDKCAIPRELKDEVSERFPEARRALIKNGGDFPFLSRPDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005808`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_005808`
Location	Chr01:173793472-173795794 (+)
Description	Similar to SPG21: Maspardin
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005808` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0007166 cell surface receptor signaling pathway Biological Process GO:0007173 epidermal growth factor receptor signaling pathway Biological Process GO:0010467 gene expression Biological Process GO:0050851 antigen receptor-mediated signaling pathway Biological Process GO:0070849 response to epidermal growth factor Biological Process GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0010008 endosome membrane Cellular Component GO:0030140 trans-Golgi network transport vesicle Cellular Component GO:0042609 CD4 receptor binding Molecular Function
KEGG gene cross-reference	bta:404069 hsa:51324 mmu:27965 xla:734314 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.385

Rank 1 · LXL04_005808 · OH-1004

Cytoplasm0.193

Rank 2 · LXL04_005808 · OH-1004

Mitochondrion0.157

Rank 3 · LXL04_005808 · OH-1004

Golgi apparatus0.154

Rank 4 · LXL04_005808 · OH-1004

Nucleus0.147

Rank 5 · LXL04_005808 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00561.27Abhydrolase_141-165 aa

PF12697.14Abhydrolase_643-261 aa

PF12146.16Hydrolase_483-161 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005808	`PF00561.27`	Abhydrolase_1	41	165	1e-15	58.8
LXL04_005808	`PF12697.14`	Abhydrolase_6	43	261	5.2e-11	44.3
LXL04_005808	`PF12146.16`	Hydrolase_4	83	161	4.5e-07	30.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card