LXL04_005756 | RubberDandelionOmics

Gene overview

LXL04_005756

Reference: OH-1004 Chr: Chr01 Coordinates: 172751287-172759756 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3786 bp · LXL04_005756|LXL04_005756|OH1004|cDNA

ATGGAGAATTTTACGAGGATGGGAGCTGGAGCTCTTCTGTTTATGCTTATAGCGATTGTACCTATGGCTTTAGGACGTGGACATGATTATGGCCAGGCACTTTCCAAGAGCATTCTGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCTGGTAATCAAAGAGTGAAATGGAGAGGAAACTCTGGTCTCCTTGACGGAAAAGCCAGTGGGGTGGATCTGGTTGGAGGATACTACGATGCAGGGGATAATGTGAAGTTTGG...

CDS

Download CDS FASTA

3786 bp · LXL04_005756|LXL04_005756|OH1004|CDS

ATGGAGAATTTTACGAGGATGGGAGCTGGAGCTCTTCTGTTTATGCTTATAGCGATTGTACCTATGGCTTTAGGACGTGGACATGATTATGGCCAGGCACTTTCCAAGAGCATTCTGTTCTTTGAAGCTCAGAGATCTGGTTACCTTCCTGGTAATCAAAGAGTGAAATGGAGAGGAAACTCTGGTCTCCTTGACGGAAAAGCCAGTGGGGTGGATCTGGTTGGAGGATACTACGATGCAGGGGATAATGTGAAGTTTGG...

Protein

Download Protein FASTA

1261 aa · LXL04_005756|LXL04_005756|OH1004|PROTEIN

MENFTRMGAGALLFMLIAIVPMALGRGHDYGQALSKSILFFEAQRSGYLPGNQRVKWRGNSGLLDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSILEYGSQMSASGELGHAMDAVKWGSDYLIKAHPQPHVLYGEVGDGNTDHYCWQRPEDMTTSRSAYRIDQNNPGSDLAGETASAMAAASIVFRRANPAYSRELLTHAHQLFDFADKYRGKYDSSISVAQKYYRSVSGYADELLWAAAWLYKATNQEYYLNY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005756`
TK1151 ID	TkA01G018950
OH-1004 ID	LXL04_005756
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.700
Protein coverage (%)	TK1151 100.000 / OH-1004 99.524 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005756

Location Chr01:172751287-172759756 (-)

Description Similar to At1g64390: Endoglucanase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g64390`	Endoglucanase 6.	No verified direct reference in this release
`At4g11050`	Endoglucanase 19.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0220100`	Hydrolyzes 1,4-beta-glycosyl linkages of 1,4-beta-glucans and 1,3-1,4-beta-glucans.	No verified direct reference in this release
`Os05g0212300`	Endoglucanase 15.	No verified direct reference in this release
`Os01g0219600`	Endoglucanase 1.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005756 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0030245 cellulose catabolic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0008810 cellulase activity Molecular Function

GO:0030246 carbohydrate binding Molecular Function

KEGG gene cross-reference

ath:AT1G64390

ath:AT4G11050

dosa:Os01g0219600

dosa:Os01g0220100

dosa:Os05g0212300

osa:4324641

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.266

Rank 1 · LXL04_005756 · OH-1004

Extracellular0.184

Rank 2 · LXL04_005756 · OH-1004

Endoplasmic reticulum0.123

Rank 3 · LXL04_005756 · OH-1004

Cytoplasm0.107

Rank 4 · LXL04_005756 · OH-1004

Lysosome / Vacuole0.100

Rank 5 · LXL04_005756 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00759.26Glyco_hydro_930-489 aa

PF09478.17CBM49546-625 aa

PF23598.2LRR_14762-1053 aa

PF29594.1LRR_SKP2810-949 aa

PF25372.2LRR_FBXL15829-889 aa

PF12799.14LRR_4966-1001 aa

PF12799.14LRR_41013-1052 aa

PF13855.13LRR_81115-1172 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005756	`PF00759.26`	Glyco_hydro_9	30	489	4.8e-167	557.4
LXL04_005756	`PF09478.17`	CBM49	546	625	1.9e-26	92.9
LXL04_005756	`PF23598.2`	LRR_14	762	1053	1.9e-11	44.1
LXL04_005756	`PF29594.1`	LRR_SKP2	810	949	2.2e-16	60.6
LXL04_005756	`PF25372.2`	LRR_FBXL15	829	889	8.1e-10	38.4
LXL04_005756	`PF12799.14`	LRR_4	966	1001	1.7e-20	73.3
LXL04_005756	`PF12799.14`	LRR_4	1013	1052	1.7e-20	73.3
LXL04_005756	`PF13855.13`	LRR_8	1115	1172	3.7e-15	56.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42059`	Arabidopsis thaliana	Endoglucanase 6	72.969%	Swiss-Prot	moderate database homology
`Q8L7I0`	Arabidopsis thaliana	Endoglucanase 19	72.104%	Swiss-Prot	weak database homology
`Q5NAT0`	Oryza sativa subsp. japonica	Endoglucanase 2	62.047%	Swiss-Prot	weak database homology
`Q6L4I2`	Oryza sativa subsp. japonica	Endoglucanase 15	61.852%	Swiss-Prot	weak database homology
`Q5NAT8`	Oryza sativa subsp. japonica	Endoglucanase 1	60.863%	Swiss-Prot	weak database homology

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