LXL04_005677 | RubberDandelionOmics

Gene overview

LXL04_005677

Reference: OH-1004 Chr: Chr01 Coordinates: 170785085-170791163 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3879 bp · LXL04_005677|LXL04_005677|OH1004|cDNA

ATGGATAATAAACAACATGTTGAATATTATATTGGAGTGCATACTTCACAAACGAACTCAAAATCACCACCTCATCAAGGATCCATGGGCAGTGTGAATGAAGGCAAGCTCAGGTTCTGTATAGACAGAGGAGGCACATTCACTGATGTCTATGCAGAAATTCCAGGTCAACCTGAAGGCAAAGTAATGAAACTGTTATCTGTTGATCCATCTAACTATGAAGATGCTCCAGTTGAAGGAATCAGAAGAATTCTAGAAGA...

CDS

Download CDS FASTA

3879 bp · LXL04_005677|LXL04_005677|OH1004|CDS

ATGGATAATAAACAACATGTTGAATATTATATTGGAGTGCATACTTCACAAACGAACTCAAAATCACCACCTCATCAAGGATCCATGGGCAGTGTGAATGAAGGCAAGCTCAGGTTCTGTATAGACAGAGGAGGCACATTCACTGATGTCTATGCAGAAATTCCAGGTCAACCTGAAGGCAAAGTAATGAAACTGTTATCTGTTGATCCATCTAACTATGAAGATGCTCCAGTTGAAGGAATCAGAAGAATTCTAGAAGA...

Protein

Download Protein FASTA

1292 aa · LXL04_005677|LXL04_005677|OH1004|PROTEIN

MDNKQHVEYYIGVHTSQTNSKSPPHQGSMGSVNEGKLRFCIDRGGTFTDVYAEIPGQPEGKVMKLLSVDPSNYEDAPVEGIRRILEDFTGNKIPRTSKLPTDNIEWIRMGTTVATNALLERKGERIALCVTKGFRDLLQIGNQARPNIFDLTVSKPSNLYEEVIEVDERIQLVLENEKESHESNIVTGISGEKVRIMKQVNEASLRPLLNGLLQKGIKCLAVVLMHSYTYPDHELAVKNLAVTMGFKHVSLSSSLTPMVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005677`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005677

Location Chr01:170785085-170791163 (+)

Description Similar to OXP1: 5-oxoprolinase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g37830`	Catalyzes the cleavage of 5-oxo-L-proline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.	A gamma-glutamyl transpeptidase-independent pathway of glutathione catabolism to glutamate via 5-oxoproline in Arabidopsis.2008 · DOI: 10.1104/pp.108.125716

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005677 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006749 glutathione metabolic process Biological Process

GO:0006751 glutathione catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0017168 5-oxoprolinase (ATP-hydrolyzing) activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT5G37830

bta:408006

ddi:DDB_G0284953

hsa:26873

rno:116684

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.594

Rank 1 · LXL04_005677 · OH-1004

Nucleus0.166

Rank 2 · LXL04_005677 · OH-1004

Peroxisome0.158

Rank 3 · LXL04_005677 · OH-1004

Mitochondrion0.149

Rank 4 · LXL04_005677 · OH-1004

Plastid0.064

Rank 5 · LXL04_005677 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05378.20Hydant_A_N38-242 aa

PF01968.25Hydantoinase_A264-563 aa

PF19278.5Hydant_A_C587-737 aa

PF02538.20Hydantoinase_B762-1291 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005677	`PF05378.20`	Hydant_A_N	38	242	4.5e-60	203.1
LXL04_005677	`PF01968.25`	Hydantoinase_A	264	563	1.5e-106	356.6
LXL04_005677	`PF19278.5`	Hydant_A_C	587	737	1.4e-10	41.6
LXL04_005677	`PF02538.20`	Hydantoinase_B	762	1291	2.2e-209	696.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FIZ7`	Arabidopsis thaliana	5-oxoprolinase 1	79.811%	Swiss-Prot	strong database homology

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