Gene Card
Gene overview
cDNA / CDS / Protein Sequences
794 bp · LXL04_005602|LXL04_005602|OH1004|cDNA
ATGAGTCGTTTCTTCTTCCATGATGTGCAGAGATGTCGAAGCCAACGAATCTGTAAGTTGGGATTTCCAATGGAGCTACGGACTTCAAATTTCCTTCTCCTCAGGCGTCGTTCGATCAGTCTGGAGGATAAGCCGAAAGTATTCAAAGCAATTTTTCCTGATAAGCGCAGAAGCCAACAACTAAATGATGAAGAATGGAGGGTCCATATGTTACCATTCAATAAATTGATTCGATATCGATGCTTACATCTGAATACATT...
765 bp · LXL04_005602|LXL04_005602|OH1004|CDS
ATGAGTCGTTTCTTCTTCCATGATGTGCAGAGATGTCGAAGCCAACGAATCTGTAAGTTGGGATTTCCAATGGAGCTACGGACTTCAAATTTCCTTCTCCTCAGGCGTCGTTCGATCAGTCTGGAGGATAAGCCGAAAGTATTCAAAGCAATTTTTCCTGATAAGCGCAGAAGCCAACAACTAAATGATGAAGAATGGAGGGTCCATATGTTACCATTCAATAAATTGATTCGATATCGATGCTTACATCTGAATACATT...
Protein
Download Protein FASTA254 aa · LXL04_005602|LXL04_005602|OH1004|PROTEIN
MSRFFFHDVQRCRSQRICKLGFPMELRTSNFLLLRRRSISLEDKPKVFKAIFPDKRRSQQLNDEEWRVHMLPFNKLIRYRCLHLNTFFLPDHMPFLLKFQDDSYVDSYVSTFGVDFVSNKSVPLEDRYSRKRMADGSKRIVYDVTDMESFNNVKQWISVFDRYANESVCKLLVGNKCDLIENTVVDTQTAKAFADELGIPFLETNAKDLVNVEQAFLTMAAVIKKKHWVIRSQRALFKLKGSQLSRRAIVVVNG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005602 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005602 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:169070495-169075037 (+) | |||||||||
| Description | Similar to YPTM1: GTP-binding protein YPTM1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000045 autophagosome assembly Biological Process GO:0006886 intracellular protein transport Biological Process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process GO:0006897 endocytosis Biological Process GO:0006914 autophagy Biological Process GO:0007030 Golgi organization Biological Process GO:0009555 pollen development Biological Process GO:0009860 pollen tube growth Biological Process GO:0015031 protein transport Biological Process GO:0016192 vesicle-mediated transport Biological Process GO:0016477 cell migration Biological Process GO:0030252 growth hormone secretion Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G11730 ath:AT4G17530 rno:81754 zma:542531 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00071.29Ras140-224 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005602 | PF00071.29 | Ras | 140 | 224 | 5.9e-26 | 91.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.