LXL04_005584 | RubberDandelionOmics

Gene overview

LXL04_005584

Reference: OH-1004 Chr: Chr01 Coordinates: 168860396-168866066 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · LXL04_005584|LXL04_005584|OH1004|cDNA

ATGAAAGCTTCTGTTTTGAGTGTCCTATACTTGTGTTCATGTATTCTACTTACCAATGGGAAGGAGGTTCAAGTTCATGACACTTCTCATATTGTGTCACATTCTGGGAATCCAACTCCCAGAAACGAACAAGGGATGCCGTATTTCCATCTCCGACCTCCAAAGAGTTGGCTGAATGGTCCGATGTATTACAAGGGAGTTTATCATCTATTCTACCAATACAATCCTTATGGTGCAACATTCAATAGCACAGCCGTATG...

CDS

Download CDS FASTA

1728 bp · LXL04_005584|LXL04_005584|OH1004|CDS

ATGAAAGCTTCTGTTTTGAGTGTCCTATACTTGTGTTCATGTATTCTACTTACCAATGGGAAGGAGGTTCAAGTTCATGACACTTCTCATATTGTGTCACATTCTGGGAATCCAACTCCCAGAAACGAACAAGGGATGCCGTATTTCCATCTCCGACCTCCAAAGAGTTGGCTGAATGGTCCGATGTATTACAAGGGAGTTTATCATCTATTCTACCAATACAATCCTTATGGTGCAACATTCAATAGCACAGCCGTATG...

Protein

Download Protein FASTA

575 aa · LXL04_005584|LXL04_005584|OH1004|PROTEIN

MKASVLSVLYLCSCILLTNGKEVQVHDTSHIVSHSGNPTPRNEQGMPYFHLRPPKSWLNGPMYYKGVYHLFYQYNPYGATFNSTAVWGHSVSQDLVNWIHLKNALVPTNPFDINGCWSGSTTFLPRNKPVVLYTGLDSKNQQVQNLAMPKNLSDPFLKEWRKYSGNPIMTPPPGVKPDSFRDPSTAWKGEDGIWRVVVGGFKDNLGVAILYRSKDFVHWSLYDKPLYFGKTSIWECPDFYPVSVNSRNGVDNSEFRRNLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005584`
TK1151 ID	TkA01G032250
OH-1004 ID	LXL04_005584
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.200
Protein coverage (%)	TK1151 99.298 / OH-1004 97.913 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005584

Location Chr01:168860396-168866066 (+)

Description Similar to CWINV1: Beta-fructofuranosidase, insoluble isoenzyme CWINV1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13790`	Beta-fructofuranosidase that can use sucrose and 1-kestose, and, to a lower extent, neokestose and levan, as substrates, but not inuline.	Unraveling the difference between invertases and fructan exohydrolases: a single amino acid (Asp-239) substitution transforms Arabidopsis cell wall invertase1 into a fructan 1-exohydrolase.2007 · DOI: 10.1104/pp.107.105049
`At1g55120`	6-fructan exohydrolase that can use phlein, levan, neokestose, levanbiose, 6-kestose, and 1-kestose as substrates.	No verified direct reference in this release
`At3g13784`	Beta-fructofuranosidase, insoluble isoenzyme CWINV5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005584 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009611 response to wounding Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004564 beta-fructofuranosidase activity Molecular Function

GO:0033949 fructan beta-(2,6)-fructosidase activity Molecular Function

KEGG gene cross-reference

ag:CAD48404

ath:AT1G55120

ath:AT3G13784

ath:AT3G13790

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.434

Rank 1 · LXL04_005584 · OH-1004

Extracellular0.238

Rank 2 · LXL04_005584 · OH-1004

Cytoplasm0.139

Rank 3 · LXL04_005584 · OH-1004

Endoplasmic reticulum0.126

Rank 4 · LXL04_005584 · OH-1004

Cell membrane0.107

Rank 5 · LXL04_005584 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00251.27Glyco_hydro_32N50-364 aa

PF08244.20Glyco_hydro_32C367-559 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005584	`PF00251.27`	Glyco_hydro_32N	50	364	2.1e-91	307.4
LXL04_005584	`PF08244.20`	Glyco_hydro_32C	367	559	6.8e-22	78.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43866`	Arabidopsis thaliana	Beta-fructofuranosidase, insoluble isoenzyme CWINV1	53.875%	Swiss-Prot	strong database homology
`Q67XZ3`	Arabidopsis thaliana	Beta-fructofuranosidase, insoluble isoenzyme CWINV3	51.229%	Swiss-Prot	strong database homology
`Q9LIB9`	Arabidopsis thaliana	Beta-fructofuranosidase, insoluble isoenzyme CWINV5	48.354%	Swiss-Prot	moderate database homology

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