LXL04_005583 | RubberDandelionOmics

Gene overview

LXL04_005583

Reference: OH-1004 Chr: Chr01 Coordinates: 168803632-168805553 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1597 bp · LXL04_005583|LXL04_005583|OH1004|cDNA

ACTTTAATCATCTCTCCAAATGGAAACATCAATCACGACTCTAATCTCACACTTTGCAAGCTTCCTGCCATTAACGTCATCAATCTTCACCATATTAGCTTTATCAGCAGGGGTTTTAAGCTACTTTTATGGACCATTATGGGGAGTTCGAAAAGTACCAGGTCCGCCCGCCATTCCCTTGGTAGGACACTTGCCTTTGCTCGCTAAACATGGCCCTGATTTGTTCTCTGTTCTCGCGAAGAAATATGGCCCTGTTTTCA...

CDS

Download CDS FASTA

1578 bp · LXL04_005583|LXL04_005583|OH1004|CDS

ATGGAAACATCAATCACGACTCTAATCTCACACTTTGCAAGCTTCCTGCCATTAACGTCATCAATCTTCACCATATTAGCTTTATCAGCAGGGGTTTTAAGCTACTTTTATGGACCATTATGGGGAGTTCGAAAAGTACCAGGTCCGCCCGCCATTCCCTTGGTAGGACACTTGCCTTTGCTCGCTAAACATGGCCCTGATTTGTTCTCTGTTCTCGCGAAGAAATATGGCCCTGTTTTCAGGTTTCATATGGGGAGACA...

Protein

Download Protein FASTA

525 aa · LXL04_005583|LXL04_005583|OH1004|PROTEIN

METSITTLISHFASFLPLTSSIFTILALSAGVLSYFYGPLWGVRKVPGPPAIPLVGHLPLLAKHGPDLFSVLAKKYGPVFRFHMGRQPLVIVADAELCRQVGIKKFKEIPNRSIPSPILASPLHRKGLFWIRDSRWSTMRNTILSMYQPTHLAKLVPMMQSFIETASQNLPVDNDQDINLNELSLKMATDVIGKAAFGFDFGLSKPNNHQDNDEQIDSFVKQHIYSTKMLKMDLSASFSIILGLLLPILQEPFRQILKRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005583`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005583

Location Chr01:168803632-168805553 (-)

Description Similar to CYP711A1: Cytochrome P450 711A1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26170`	Involved in the biosynthesis of strigolactone natural products, bioactive compounds promoting plant fitness and soil microbe interactions, but preventing shoot branching.	MAX1 encodes a cytochrome P450 family member that acts downstream of MAX3/4 to produce a carotenoid-derived branch-inhibiting hormone.2005 · DOI: 10.1016/j.devcel.2005.01.009 MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis.2006 · DOI: 10.1073/pnas.0509463102 Carlactone is converted to carlactonoic acid by MAX1 in Arabidopsis and its methyl ester can directly interact with AtD14 in vitro.2014 · DOI: 10.1073/pnas.1410801111 Hydroxyl carlactone derivatives are predominant strigolactones in Arabidopsis .2020 · DOI: 10.1002/pld3.219

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005583 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006690 icosanoid metabolic process Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0009963 positive regulation of flavonoid biosynthetic process Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0016117 carotenoid biosynthetic process Biological Process

GO:0030644 intracellular chloride ion homeostasis Biological Process

GO:0045471 response to ethanol Biological Process

GO:0045907 positive regulation of vasoconstriction Biological Process

GO:0046457 prostanoid biosynthetic process Biological Process

GO:0070542 response to fatty acid Biological Process

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT2G26170

hsa:6916

rno:24886

ssc:397112

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.843

Rank 1 · LXL04_005583 · OH-1004

Cytoplasm0.060

Rank 2 · LXL04_005583 · OH-1004

Mitochondrion0.056

Rank 3 · LXL04_005583 · OH-1004

Cell membrane0.032

Rank 4 · LXL04_005583 · OH-1004

Nucleus0.031

Rank 5 · LXL04_005583 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45047-511 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005583	`PF00067.28`	p450	47	511	1.7e-88	298.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`B9DFU2`	Arabidopsis thaliana	Cytochrome P450 711A1	66.341%	Swiss-Prot	strong database homology

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