LXL04_005574 | RubberDandelionOmics

Gene overview

LXL04_005574

Reference: OH-1004 Chr: Chr01 Coordinates: 168604140-168606283 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1596 bp · LXL04_005574|LXL04_005574|OH1004|cDNA

ATGACTAGGGGTTCTAAATCTCGTACAAGTGATAAACCTTCAATCAATTACAGATATAATCCACACAGAGGATCGTTTTCAGACCTTGTGGATGTCACCCGTGAAGATTACACTCCCAGTTCCCATGATAACACCACCAAACAACCTCCTAAAAAATCTGAATCCACGTCACCCATTCTAACCACCACAGATCTCATCTCAGGAGCCAACCAGTTATGGAACTTCGCCACCTCATCACTTCCTGTTCTACGCCATAGAAC...

CDS

Download CDS FASTA

1596 bp · LXL04_005574|LXL04_005574|OH1004|CDS

ATGACTAGGGGTTCTAAATCTCGTACAAGTGATAAACCTTCAATCAATTACAGATATAATCCACACAGAGGATCGTTTTCAGACCTTGTGGATGTCACCCGTGAAGATTACACTCCCAGTTCCCATGATAACACCACCAAACAACCTCCTAAAAAATCTGAATCCACGTCACCCATTCTAACCACCACAGATCTCATCTCAGGAGCCAACCAGTTATGGAACTTCGCCACCTCATCACTTCCTGTTCTACGCCATAGAAC...

Protein

Download Protein FASTA

531 aa · LXL04_005574|LXL04_005574|OH1004|PROTEIN

MTRGSKSRTSDKPSINYRYNPHRGSFSDLVDVTREDYTPSSHDNTTKQPPKKSESTSPILTTTDLISGANQLWNFATSSLPVLRHRTSTHNTDNHNLQKPNTFYYPAKEGNIIASIPSKVLPTVDVQLQQDLELDSLHVAKKLSSFDCCSDSHFFFHLLRSCKEKRVSNEMILDLYGWMSDIHNIKINGVTSLNESTNDIILPTSSTFQPNGKENEVSEMIEGQECTFVNQEGPGVEICISTTTCKPTYGVGKQEHAFAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005574`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005574

Location Chr01:168604140-168606283 (+)

Description Similar to SAMC1: S-adenosylmethionine carrier 1, chloroplastic/mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39460`	Transporter involved in exchange reactions through membranes.	Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.2006 · DOI: 10.1104/pp.106.086975 Arabidopsis SAMT1 defines a plastid transporter regulating plastid biogenesis and plant development.2006 · DOI: 10.1105/tpc.105.040741
`At1g34065`	Probable S-adenosylmethionine (SAM) transporter able to catalyze both uniport and exchange reactions through membranes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005574 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0015805 S-adenosyl-L-methionine transport Biological Process

GO:0048250 iron import into the mitochondrion Biological Process

GO:0051503 adenine nucleotide transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

KEGG gene cross-reference

ath:AT1G34065

ath:AT4G39460

ddi:DDB_G0269470

ddi:DDB_G0285599

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.645

Rank 1 · LXL04_005574 · OH-1004

Plastid0.134

Rank 2 · LXL04_005574 · OH-1004

Cytoplasm0.086

Rank 3 · LXL04_005574 · OH-1004

Peroxisome0.056

Rank 4 · LXL04_005574 · OH-1004

Nucleus0.043

Rank 5 · LXL04_005574 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153.33Mito_carr255-336 aa

PF00153.33Mito_carr344-430 aa

PF00153.33Mito_carr437-528 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005574	`PF00153.33`	Mito_carr	255	336	1.5e-67	224.1
LXL04_005574	`PF00153.33`	Mito_carr	344	430	1.5e-67	224.1
LXL04_005574	`PF00153.33`	Mito_carr	437	528	1.5e-67	224.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94AG6`	Arabidopsis thaliana	S-adenosylmethionine carrier 1, chloroplastic/mitochondrial	34.799%	Swiss-Prot	moderate database homology
`F4HT41`	Arabidopsis thaliana	Probable S-adenosylmethionine carrier 2, chloroplastic	33.091%	Swiss-Prot	moderate database homology

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