Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1661 bp · LXL04_005542|LXL04_005542|OH1004|cDNA
ATGATGCCATTACTATACCCAAATCAACCCCTCTCTTCTTCCATTTATACGGACCACACCGCCATGTCTATCACAGCATCTTCTTCGCCATACTCGACTACAATCAAGTGCTGCGAAGACACAATCGGCCGCCGGAGGAGAATCGTCATTGACGAAAACTGTTTCCCGGAGAAAAACCTCACACTCAACACAACCACCGCGAAACCTCCACGGCCACGGCGAATCATCCTCGTCCGACATGGCCAGAGCGAAGGAAACGT...
1644 bp · LXL04_005542|LXL04_005542|OH1004|CDS
ATGATGCCATTACTATACCCAAATCAACCCCTCTCTTCTTCCATTTATACGGACCACACCGCCATGTCTATCACAGCATCTTCTTCGCCATACTCGACTACAATCAAGTGCTGCGAAGACACAATCGGCCGCCGGAGGAGAATCGTCATTGACGAAAACTGTTTCCCGGAGAAAAACCTCACACTCAACACAACCACCGCGAAACCTCCACGGCCACGGCGAATCATCCTCGTCCGACATGGCCAGAGCGAAGGAAACGT...
Protein
Download Protein FASTA547 aa · LXL04_005542|LXL04_005542|OH1004|PROTEIN
MMPLLYPNQPLSSSIYTDHTAMSITASSSPYSTTIKCCEDTIGRRRRIVIDENCFPEKNLTLNTTTAKPPRPRRIILVRHGQSEGNVDEGAYTRVADPRIRLTERGKQEAEQCGERIREMIEKDGADDWKVYFYVSPYQRTIETLRGLGTAFERSRIAGVREEPRLREQDFGSVFYPYPPTPPSLCLHLLNFRGLKTATYDEEAFVSIDLHYDDIFCPKPLIYLNQQVVPLRDLDFNGMNFSAFFTVMRKISASRSIVLY...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005542 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005542 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:167956516-167959938 (+) | |||||||||
| Description | Similar to At3g05170: Phosphoglycerate mutase-like protein AT74 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0032366 intracellular sterol transport Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003993 acid phosphatase activity Molecular Function GO:0016791 phosphatase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G08940 ath:AT3G05170 sce:YDR051C These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00300.28His_Phos_175-173 aaPF00300.28His_Phos_1374-486 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005542 | PF00300.28 | His_Phos_1 | 75 | 173 | 3.3e-24 | 86.4 |
| LXL04_005542 | PF00300.28 | His_Phos_1 | 374 | 486 | 3.3e-24 | 86.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.