LXL04_005437 | RubberDandelionOmics

Gene overview

LXL04_005437

Reference: OH-1004 Chr: Chr01 Coordinates: 163855445-163855804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

360 bp · LXL04_005437|LXL04_005437|OH1004|cDNA

ATGGCGGACAGACAATTcatagataacacatgtaaaGGCACACCCTATGACAACTTATGCCTCTCGATCTTATTGCCAGACCTTAAAAGCCAAAATACAGATTTAACAAGTTTAGCACTCATCGCAGTAAACGCAGTAAAAAACAGAGGCATTCAAACCCAACAACAAATCCAGGCGCTCAAAAACTCACGGCCAGAGTTTACGGCGACGCTGGTGAAATGTGCAGAGATGTACAACGCCTTAGTGACTGTAGATGTACC...

CDS

Download CDS FASTA

360 bp · LXL04_005437|LXL04_005437|OH1004|CDS

ATGGCGGACAGACAATTCATAGATAACACATGTAAAGGCACACCCTATGACAACTTATGCCTCTCGATCTTATTGCCAGACCTTAAAAGCCAAAATACAGATTTAACAAGTTTAGCACTCATCGCAGTAAACGCAGTAAAAAACAGAGGCATTCAAACCCAACAACAAATCCAGGCGCTCAAAAACTCACGGCCAGAGTTTACGGCGACGCTGGTGAAATGTGCAGAGATGTACAACGCCTTAGTGACTGTAGATGTACC...

Protein

Download Protein FASTA

119 aa · LXL04_005437|LXL04_005437|OH1004|PROTEIN

MADRQFIDNTCKGTPYDNLCLSILLPDLKSQNTDLTSLALIAVNAVKNRGIQTQQQIQALKNSRPEFTATLVKCAEMYNALVTVDVPLSINALNGGDPKFAEGGMADSNLESLACERSF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005437`
TK1151 ID	TkA01G050510
OH-1004 ID	LXL04_005437
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005437

Location Chr01:163855445-163855804 (-)

Description Similar to C/VIF1: Cell wall / vacuolar inhibitor of fructosidase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47960`	Inhibits fructosidases from vacuoles (vacuolar invertase VI).	In Arabidopsis thaliana, the invertase inhibitors AtC/VIF1 and 2 exhibit distinct target enzyme specificities and expression profiles.2004 · DOI: 10.1016/j.febslet.2004.07.062

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005437 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009827 plant-type cell wall modification Biological Process

GO:0043086 negative regulation of catalytic activity Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G47960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.610

Rank 1 · LXL04_005437 · OH-1004

Cytoplasm0.184

Rank 2 · LXL04_005437 · OH-1004

Lysosome / Vacuole0.086

Rank 3 · LXL04_005437 · OH-1004

Endoplasmic reticulum0.062

Rank 4 · LXL04_005437 · OH-1004

Nucleus0.033

Rank 5 · LXL04_005437 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04043.21PMEI6-95 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005437	`PF04043.21`	PMEI	6	95	2.8e-12	47.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HWQ8`	Arabidopsis thaliana	Cell wall / vacuolar inhibitor of fructosidase 1	35.593%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card