LXL04_005411 | RubberDandelionOmics

Gene overview

LXL04_005411

Reference: OH-1004 Chr: Chr01 Coordinates: 162911407-162914123 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · LXL04_005411|LXL04_005411|OH1004|cDNA

ATGCACAAAAGACCAATGAGTTGGTGTACGTGTTGTTGGGAGCCAATATTTGGGCGTGATCACAAAGAAACAACAAGTGTTGGTGTTAAAAACGTTGGAGATTTTGGAAAAGATGGATTGTTATGGTTTCATGATATTGGTAAACATGGATATGGTGAATACTCAATGGCTATAATTCAAGCAAACCAAGTTCTTGAAGATCAAAGCCAAATCGAATCCGGTCCTTTTGGTACGTATGTTGGTGTTTATGATGGTCATGG...

CDS

Download CDS FASTA

1128 bp · LXL04_005411|LXL04_005411|OH1004|CDS

ATGCACAAAAGACCAATGAGTTGGTGTACGTGTTGTTGGGAGCCAATATTTGGGCGTGATCACAAAGAAACAACAAGTGTTGGTGTTAAAAACGTTGGAGATTTTGGAAAAGATGGATTGTTATGGTTTCATGATATTGGTAAACATGGATATGGTGAATACTCAATGGCTATAATTCAAGCAAACCAAGTTCTTGAAGATCAAAGCCAAATCGAATCCGGTCCTTTTGGTACGTATGTTGGTGTTTATGATGGTCATGG...

Protein

Download Protein FASTA

375 aa · LXL04_005411|LXL04_005411|OH1004|PROTEIN

MHKRPMSWCTCCWEPIFGRDHKETTSVGVKNVGDFGKDGLLWFHDIGKHGYGEYSMAIIQANQVLEDQSQIESGPFGTYVGVYDGHGGPDCARYVCDNLFKHFQANLDRGEGNVTPEKIKRAFLETENKFTDLVSEMWDTRTNIATCGSCCLVGVVCHQTLFVANLGDARAVLGRKSGNGIIAIQLSTEHNANLESVRRELRDLHPHDDEIVVMKHGVWRVKGIIQVSRSIGDVYMKHARFNKEPIAAKFRLPEPMVMPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005411`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005411

Location Chr01:162911407-162914123 (+)

Description Similar to At3g17090: Probable protein phosphatase 2C 42

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17090`	Dephosphorylates and represses plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release
`At3g51370`	May dephosphorylate and repress plasma membrane H(+)-ATPases (PM H(+)-ATPases, e.g. AHA1 and AHA2), thus influencing negatively plant growth and fitness.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0717800`	Probable protein phosphatase 2C 60.	No verified direct reference in this release
`Os03g0832400`	Probable protein phosphatase 2C 36.	No verified direct reference in this release
`Os10g0544900`	Probable protein phosphatase 2C 72.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005411 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G17090

ath:AT3G51370

dosa:Os03g0832400

dosa:Os06g0717800

dosa:Os10g0544900

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.385

Rank 1 · LXL04_005411 · OH-1004

Cytoplasm0.379

Rank 2 · LXL04_005411 · OH-1004

Nucleus0.258

Rank 3 · LXL04_005411 · OH-1004

Endoplasmic reticulum0.083

Rank 4 · LXL04_005411 · OH-1004

Lysosome / Vacuole0.080

Rank 5 · LXL04_005411 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C78-321 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005411	`PF00481.27`	PP2C	78	321	1.3e-40	140.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0V7V2`	Arabidopsis thaliana	Probable protein phosphatase 2C 42	69.706%	Swiss-Prot	strong database homology
`Q9SD12`	Arabidopsis thaliana	Probable protein phosphatase 2C 46	56.805%	Swiss-Prot	strong database homology
`Q5Z8P0`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 60	54.521%	Swiss-Prot	strong database homology
`Q7Y138`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 36	59.130%	Swiss-Prot	strong database homology
`Q7XCJ7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 72	53.003%	Swiss-Prot	strong database homology

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