LXL04_005267 | RubberDandelionOmics

Gene overview

LXL04_005267

Reference: OH-1004 Chr: Chr01 Coordinates: 159300203-159300767 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

453 bp · LXL04_005267|LXL04_005267|OH1004|cDNA

ATGAATTCAGGTGACGATGCTTCAGCTACAAGTTCTTCGGTTTCTTCCTTCGATAAATTCTTCAATCAATTAGCATCGCCCACTAGGAAACCCCCGATTCCTGTGTTTAATTACTTTGACGAGAACGGAGGCTGGAAGATATCTCCCGAGGAGCTTTTACGAACGAGAGAATGCTTCGCCATCTTCTCAGAGGCAATTTATCAAACACCTTCTGTGCATTGGCCTCGATCAGATAGATCTGGGGCGGTCGGAGGTGATGA...

CDS

Download CDS FASTA

453 bp · LXL04_005267|LXL04_005267|OH1004|CDS

ATGAATTCAGGTGACGATGCTTCAGCTACAAGTTCTTCGGTTTCTTCCTTCGATAAATTCTTCAATCAATTAGCATCGCCCACTAGGAAACCCCCGATTCCTGTGTTTAATTACTTTGACGAGAACGGAGGCTGGAAGATATCTCCCGAGGAGCTTTTACGAACGAGAGAATGCTTCGCCATCTTCTCAGAGGCAATTTATCAAACACCTTCTGTGCATTGGCCTCGATCAGATAGATCTGGGGCGGTCGGAGGTGATGA...

Protein

Download Protein FASTA

150 aa · LXL04_005267|LXL04_005267|OH1004|PROTEIN

MNSGDDASATSSSVSSFDKFFNQLASPTRKPPIPVFNYFDENGGWKISPEELLRTRECFAIFSEAIYQTPSVHWPRSDRSGAVGGDELMVSACCKHFSAYDLELWGNYSRYSFNAIVRILHLLVRNDVRSCWSEVRSEVEGAGRRRSVDR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005267`
TK1151 ID	TkA01G071160
OH-1004 ID	LXL04_005267
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005267

Location Chr01:159300203-159300767 (-)

Description Similar to BXL6: Probable beta-D-xylosidase 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g10560`	Probable beta-D-xylosidase 6.	No verified direct reference in this release
`At5g64570`	Beta-D-xylosidase showing an optimal efficiency with the natural substrate xylobiose.	No verified direct reference in this release
`At5g49360`	Involved in pectic arabinan modification in mucilage secretory cells.	AtBXL1, a novel higher plant (Arabidopsis thaliana) putative beta-xylosidase gene, is involved in secondary cell wall metabolism and plant development.2003 · DOI: 10.1046/j.1365-313x.2003.01654.x AtBXL1 encodes a bifunctional beta-D-xylosidase/alpha-L-arabinofuranosidase required for pectic arabinan modification in Arabidopsis mucilage secretory cells.2009 · DOI: 10.1104/pp.109.138388
`At5g09730`	Involved in the hydrolysis of arabinan.	Purification, functional characterization, cloning, and identification of mutants of a seed-specific arabinan hydrolase in Arabidopsis.2006 · DOI: 10.1093/jxb/erj205
`At1g78060`	Probable beta-D-xylosidase 7.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005267 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0010214 seed coat development Biological Process

GO:0031222 arabinan catabolic process Biological Process

GO:0045493 xylan catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

KEGG gene cross-reference

ath:AT1G78060

ath:AT5G09730

ath:AT5G10560

ath:AT5G49360

ath:AT5G64570

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.385

Rank 1 · LXL04_005267 · OH-1004

Nucleus0.381

Rank 2 · LXL04_005267 · OH-1004

Mitochondrion0.146

Rank 3 · LXL04_005267 · OH-1004

Cell membrane0.116

Rank 4 · LXL04_005267 · OH-1004

Endoplasmic reticulum0.078

Rank 5 · LXL04_005267 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LXA8`	Arabidopsis thaliana	Probable beta-D-xylosidase 6	74.194%	Swiss-Prot	weak database homology
`Q9FLG1`	Arabidopsis thaliana	Beta-D-xylosidase 4	58.333%	Swiss-Prot	weak database homology
`Q9FGY1`	Arabidopsis thaliana	Beta-D-xylosidase 1	51.351%	Swiss-Prot	weak database homology
`Q9LXD6`	Arabidopsis thaliana	Beta-D-xylosidase 3	55.556%	Swiss-Prot	weak database homology
`Q9SGZ5`	Arabidopsis thaliana	Probable beta-D-xylosidase 7	54.054%	Swiss-Prot	weak database homology

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