LXL04_005183 | RubberDandelionOmics

Gene overview

LXL04_005183

Reference: OH-1004 Chr: Chr01 Coordinates: 157426387-157429116 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1530 bp · LXL04_005183|LXL04_005183|OH1004|cDNA

ATGGGGAAGGTAGGATTATGTTTGGCTGTGGGGTGTGCTTTGGCGAGTTGTGCGATCGCGGCAGTGATGGTGGGGAGGAGAGTAAAGAGTCGACGACGATGGTGGAACGTCGTTAGGGCCTTGGATGAGTTTGAAGAGGCGGCGTCGACACCAGTCGGAAGGTTAAGACAAGTGGTTGATGCTATGGCCGTTGAGATGCACGCTGGTTTGGCTTCCGAGGGTGGGAGTAAGCTTAAGATGTTACTCACCTATGTCGACAA...

CDS

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1530 bp · LXL04_005183|LXL04_005183|OH1004|CDS

ATGGGGAAGGTAGGATTATGTTTGGCTGTGGGGTGTGCTTTGGCGAGTTGTGCGATCGCGGCAGTGATGGTGGGGAGGAGAGTAAAGAGTCGACGACGATGGTGGAACGTCGTTAGGGCCTTGGATGAGTTTGAAGAGGCGGCGTCGACACCAGTCGGAAGGTTAAGACAAGTGGTTGATGCTATGGCCGTTGAGATGCACGCTGGTTTGGCTTCCGAGGGTGGGAGTAAGCTTAAGATGTTACTCACCTATGTCGACAA...

Protein

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509 aa · LXL04_005183|LXL04_005183|OH1004|PROTEIN

MGKVGLCLAVGCALASCAIAAVMVGRRVKSRRRWWNVVRALDEFEEAASTPVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTYVDNLPDGSENGTYYALHIGGTNFRLLRIQLGGQRSILGHDVERKPIPQHLMTSTSEELFDFITVSLKEFIETTNGANQIRGKDLGFTFSFPVKQTSLSSGTLIKWTKGFSIDDMVEKDVVECLQKALCRTGLDMNVAALVNDSVGTLALGHFYDKDTVAAVVIGTGTNACYLERAD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005183`
TK1151 ID	TkA01G077440
OH-1004 ID	LXL04_005183
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005183

Location Chr01:157426387-157429116 (+)

Description Similar to At1g50460: Hexokinase-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g50460`	Fructose and glucose phosphorylating enzyme (By similarity).	Function of Arabidopsis hexokinase-like1 as a negative regulator of plant growth.2009 · DOI: 10.1093/jxb/erp252 Arabidopsis Hexokinase-Like1 and Hexokinase1 form a critical node in mediating plant glucose and ethylene responses.2012 · DOI: 10.1104/pp.112.195636
`At3g20040`	Fructose and glucose phosphorylating enzyme (By similarity).	No verified direct reference in this release
`At2g19860`	Fructose and glucose phosphorylating enzyme.	Mitochondria-associated hexokinases play a role in the control of programmed cell death in Nicotiana benthamiana.2006 · DOI: 10.1105/tpc.106.041509

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0940100`	Fructose and glucose phosphorylating enzyme.	OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice.2022 · DOI: 10.1007/s00122-022-04189-7

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005183 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001678 intracellular glucose homeostasis Biological Process

GO:0006006 glucose metabolic process Biological Process

GO:0006096 glycolytic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0009409 response to cold Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009747 hexokinase-dependent signaling Biological Process

GO:0009749 response to glucose Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0012501 programmed cell death Biological Process

GO:0019318 hexose metabolic process Biological Process

GO:0051156 glucose 6-phosphate metabolic process Biological Process

KEGG gene cross-reference

ath:AT1G50460

ath:AT2G19860

ath:AT3G20040

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.407

Rank 1 · LXL04_005183 · OH-1004

Mitochondrion0.222

Rank 2 · LXL04_005183 · OH-1004

Peroxisome0.215

Rank 3 · LXL04_005183 · OH-1004

Nucleus0.150

Rank 4 · LXL04_005183 · OH-1004

Endoplasmic reticulum0.078

Rank 5 · LXL04_005183 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00349.28Hexokinase_141-234 aa

PF03727.23Hexokinase_2243-493 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005183	`PF00349.28`	Hexokinase_1	41	234	6.1e-68	229.3
LXL04_005183	`PF03727.23`	Hexokinase_2	243	493	2.3e-75	253.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LPS1`	Arabidopsis thaliana	Hexokinase-3	69.767%	Swiss-Prot	strong database homology
`Q56XE8`	Arabidopsis thaliana	Hexokinase-4	63.333%	Swiss-Prot	strong database homology
`P93834`	Arabidopsis thaliana	Hexokinase-2	53.785%	Swiss-Prot	strong database homology
`Q2KNB4`	Oryza sativa subsp. japonica	Hexokinase-3	64.659%	Swiss-Prot	strong database homology

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