Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1221 bp · LXL04_005129|LXL04_005129|OH1004|cDNA
ATGATCAATAAGCTCAATGTTGAACCTGTACAACAGTTACTTGCTAATACATTATATTTACACAATTACATTCGATATCTTATTAAACATACAAACCTTTGGCAATTCATCCCAAAATTACAAGAAAGAATTAGATGTATACGATTTTGGTACATTATCACAAGATGTCACTCACTACACAGGAGCGACATATGGGAAACATTACAAAATTATGGTCAAGCTCCATCCATTAATCGTAGTGCCGGGGAACTTCGCCTGTA...
1221 bp · LXL04_005129|LXL04_005129|OH1004|CDS
ATGATCAATAAGCTCAATGTTGAACCTGTACAACAGTTACTTGCTAATACATTATATTTACACAATTACATTCGATATCTTATTAAACATACAAACCTTTGGCAATTCATCCCAAAATTACAAGAAAGAATTAGATGTATACGATTTTGGTACATTATCACAAGATGTCACTCACTACACAGGAGCGACATATGGGAAACATTACAAAATTATGGTCAAGCTCCATCCATTAATCGTAGTGCCGGGGAACTTCGCCTGTA...
Protein
Download Protein FASTA406 aa · LXL04_005129|LXL04_005129|OH1004|PROTEIN
MINKLNVEPVQQLLANTLYLHNYIRYLIKHTNLWQFIPKLQERIRCIRFWYIITRCHSLHRSDIWETLQNYGQAPSINRSAGELRLYKDFTELSLPRNCEISFPNGEEDFMVFDVAIKPNAGFYSMTTKLFIILMPLLNLIFFIGGRVVVGDMYPHYAAYVKCLTKVVIDVVVSIKNTNYSYVDRGFALGLLLRWWHVGFDLAPSILLCFLTLFLRLSFLQHMVSGIVWANRLPFDFLFPSTTTQGLLGTRFFNFHLFLL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005129 |
|---|---|
| TK1151 ID | TkA07G334460 |
| OH-1004 ID | LXL04_005129 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 51.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 45.320Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005129 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:155955378-155957332 (-) | |||||||||
| Description | Similar to RCE2: Probable NEDD8-conjugating enzyme Ubc12-like | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009733 response to auxin Biological Process GO:0036211 protein modification process Biological Process GO:0045116 protein neddylation Biological Process GO:0045879 negative regulation of smoothened signaling pathway Biological Process GO:0061059 positive regulation of peptidoglycan recognition protein signaling pathway Biological Process GO:0140958 target-directed miRNA degradation Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0004842 ubiquitin-protein transferase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0019787 ubiquitin-like protein transferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G18600 ath:AT4G36800 dme:Dmel_CG7375 xla:446800 xtr:394553 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.