LXL04_005128 | RubberDandelionOmics

Gene overview

LXL04_005128

Reference: OH-1004 Chr: Chr01 Coordinates: 155935425-155938272 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1021 bp · LXL04_005128|LXL04_005128|OH1004|cDNA

TATTACCTCACCGACTATCACCCACCCACCCCACTCCCCTCacctctctctctttctccaTTTATACACCTTCAAATCAGTCCTTCTCACTactctctctttctttctctctgtctctctctcATTTATGGACTATTTAGTGTTTTTTTCACTCGTTTTCATACTCAATGGACCATCGGTGACGAATGCTGGCTACTGGCCACCTTCACCTGGTTTCTACCCAAGTTCCAAGTTCAGGTCCATGACCTTTAACCAAGGCT...

CDS

Download CDS FASTA

894 bp · LXL04_005128|LXL04_005128|OH1004|CDS

ATGGACTATTTAGTGTTTTTTTCACTCGTTTTCATACTCAATGGACCATCGGTGACGAATGCTGGCTACTGGCCACCTTCACCTGGTTTCTACCCAAGTTCCAAGTTCAGGTCCATGACCTTTAACCAAGGCTTCAGAAATCTCTGGGGACCTAGCCACCAATCCGTCCACAACAATGCCCTTGACATCTGGCTCGACCGTACATCAGGAAGCGGGTTCAAGTCGGTAAAACCGTTCCGATCCGGATACTTTGGAGCATC...

Protein

Download Protein FASTA

297 aa · LXL04_005128|LXL04_005128|OH1004|PROTEIN

MDYLVFFSLVFILNGPSVTNAGYWPPSPGFYPSSKFRSMTFNQGFRNLWGPSHQSVHNNALDIWLDRTSGSGFKSVKPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGTTFGKPYTLQTNVYIRGSGDGKIIGREMKFHLWFDPTKNFHHYAILWSPKDLIFFVDDVPIRRYPRKSSATFPLRPMWVYGSIWDASSWATEDGKYKADYKYQPFVGRFTNFKAGGCSAYSSPWCRPVTASPGRAGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005128`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_005128

Location Chr01:155935425-155938272 (+)

Description Similar to XTH32: Probable xyloglucan endotransglucosylase/hydrolase protein 32

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36870`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At3g44990`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	Group III-A XTH genes of Arabidopsis encode predominant xyloglucan endohydrolases that are dispensable for normal growth.2013 · DOI: 10.1104/pp.112.207308 XTH31, encoding an in vitro XEH/XET-active enzyme, regulates aluminum sensitivity by modulating in vivo XET action, cell wall xyloglucan content, and aluminum binding capacity in Arabidopsis.2012 · DOI: 10.1105/tpc.112.106039 Distinct catalytic capacities of two aluminium-repressed Arabidopsis thaliana xyloglucan endotransglucosylase/hydrolases, XTH15 and XTH31, heterologously produced in Pichia.2015 · DOI: 10.1016/j.phytochem.2014.09.020
`At1g14720`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At1g32170`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At1g10550`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005128 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010154 fruit development Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0016998 cell wall macromolecule catabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080086 stamen filament development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

KEGG gene cross-reference

ath:AT1G10550

ath:AT1G14720

ath:AT1G32170

ath:AT2G36870

ath:AT3G44990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.366

Rank 1 · LXL04_005128 · OH-1004

Lysosome / Vacuole0.226

Rank 2 · LXL04_005128 · OH-1004

Golgi apparatus0.158

Rank 3 · LXL04_005128 · OH-1004

Cytoplasm0.113

Rank 4 · LXL04_005128 · OH-1004

Cell membrane0.108

Rank 5 · LXL04_005128 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1642-224 aa

PF06955.20XET_C259-295 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005128	`PF00722.29`	Glyco_hydro_16	42	224	2.6e-55	187.3
LXL04_005128	`PF06955.20`	XET_C	259	295	5.9e-12	45.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJL9`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 32	77.104%	Swiss-Prot	strong database homology
`P93046`	Arabidopsis thaliana	Xyloglucan endotransglucosylase/hydrolase protein 31	62.329%	Swiss-Prot	strong database homology
`Q38909`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 28	40.000%	Swiss-Prot	moderate database homology
`Q38908`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 30	39.928%	Swiss-Prot	moderate database homology
`Q8LC45`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 33	37.770%	Swiss-Prot	moderate database homology

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