LXL04_005079 | RubberDandelionOmics

Gene overview

LXL04_005079

Reference: OH-1004 Chr: Chr01 Coordinates: 154296739-154298229 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1491 bp · LXL04_005079|LXL04_005079|OH1004|cDNA

ATGGCTTTACAAGAATCACAAGAACACAACCAACTTCACTTTCTTGTTATACCATTAGCATCACCAGGCCACTATATCCCCACCATTGACATAGCCAACTTACTAGCTCAAAATGGAGTTAAAGTCACCATAGTCACCACCCCAGTCAACGCCCTCAGATTTGGGTCAATCCTTGATCAACCAATCAAATCGGGTCTTCCAATCCACTTTCTTGAATTCCCGTTTCCATCAATGGAGTTTGGGTTACCTGAAGGCTGTGA...

CDS

Download CDS FASTA

1491 bp · LXL04_005079|LXL04_005079|OH1004|CDS

ATGGCTTTACAAGAATCACAAGAACACAACCAACTTCACTTTCTTGTTATACCATTAGCATCACCAGGCCACTATATCCCCACCATTGACATAGCCAACTTACTAGCTCAAAATGGAGTTAAAGTCACCATAGTCACCACCCCAGTCAACGCCCTCAGATTTGGGTCAATCCTTGATCAACCAATCAAATCGGGTCTTCCAATCCACTTTCTTGAATTCCCGTTTCCATCAATGGAGTTTGGGTTACCTGAAGGCTGTGA...

Protein

Download Protein FASTA

496 aa · LXL04_005079|LXL04_005079|OH1004|PROTEIN

MALQESQEHNQLHFLVIPLASPGHYIPTIDIANLLAQNGVKVTIVTTPVNALRFGSILDQPIKSGLPIHFLEFPFPSMEFGLPEGCESLDTLPSFSLIGSLLLAYNTLQEKVERYIETLNPKPNCIISDTFLVWPAETAKKFQIPRIIFDGMNCFTQMCNHFLYLTKVYENLGESDSLVLPGLPDRIELKRSQLPIVFNSGSKPVNDFHERIRRSESEAYGVIINSFNELEQGYADEYQKLREGKVWCIGPLSLCYKDVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005079`
TK1151 ID	TkA01G088420
OH-1004 ID	LXL04_005079
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.700
Protein coverage (%)	TK1151 98.196 / OH-1004 76.815 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005079

Location Chr01:154296739-154298229 (-)

Description Similar to UGT73C5: UDP-glycosyltransferase 73C5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g36800`	Specifically catalyzes 23-O-glucosylation of brassinosteroids, resulting probably in their inactivation.	Detoxification of the Fusarium mycotoxin deoxynivalenol by a UDP-glucosyltransferase from Arabidopsis thaliana.2003 · DOI: 10.1074/jbc.m307552200 N-glucosylation of cytokinins by glycosyltransferases of Arabidopsis thaliana.2004 · DOI: 10.1074/jbc.m409569200 The UGT73C5 of Arabidopsis thaliana glucosylates brassinosteroids.2005 · DOI: 10.1073/pnas.0504279102

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005079 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016131 brassinosteroid metabolic process Biological Process

GO:0016134 saponin metabolic process Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0098754 detoxification Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008194 UDP-glycosyltransferase activity Molecular Function

GO:0035251 UDP-glucosyltransferase activity Molecular Function

GO:0046527 glucosyltransferase activity Molecular Function

GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity Molecular Function

GO:0050502 cis-zeatin O-beta-D-glucosyltransferase activity Molecular Function

KEGG gene cross-reference

ag:AFN26667

ath:AT2G36800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.832

Rank 1 · LXL04_005079 · OH-1004

Nucleus0.228

Rank 2 · LXL04_005079 · OH-1004

Endoplasmic reticulum0.056

Rank 3 · LXL04_005079 · OH-1004

Peroxisome0.045

Rank 4 · LXL04_005079 · OH-1004

Mitochondrion0.038

Rank 5 · LXL04_005079 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00201.25UDPGT282-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005079	`PF00201.25`	UDPGT	282	406	4.3e-19	69.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQ94`	Arabidopsis thaliana	UDP-glycosyltransferase 73C5	48.971%	Swiss-Prot	moderate database homology

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