LXL04_005072 | RubberDandelionOmics

Gene overview

LXL04_005072

Reference: OH-1004 Chr: Chr01 Coordinates: 154245102-154245937 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

756 bp · LXL04_005072|LXL04_005072|OH1004|cDNA

ATGGCTGCAAGAACACTAATACCCTCACCTCCGCTATCTCTCCTACCAGGAAGAGGCGCCACCACCACCGTCTCTTGCTGGAAACCCACGAGTCGAGTAGGCGGAGAAAGAATCCTAAGGGTTTATGCGGCAGCTGGAGAAGGCGGAGGAGGAGGTGGAGGGAAACAGAGGGCACCACCAGGAATAGACACCAGAATCCATTGGGAGAACGAAGATGATGGATGGGTTGGCGGCAGCACCACCCAATCTGCACCAGAAGA...

CDS

Download CDS FASTA

756 bp · LXL04_005072|LXL04_005072|OH1004|CDS

ATGGCTGCAAGAACACTAATACCCTCACCTCCGCTATCTCTCCTACCAGGAAGAGGCGCCACCACCACCGTCTCTTGCTGGAAACCCACGAGTCGAGTAGGCGGAGAAAGAATCCTAAGGGTTTATGCGGCAGCTGGAGAAGGCGGAGGAGGAGGTGGAGGGAAACAGAGGGCACCACCAGGAATAGACACCAGAATCCATTGGGAGAACGAAGATGATGGATGGGTTGGCGGCAGCACCACCCAATCTGCACCAGAAGA...

Protein

Download Protein FASTA

251 aa · LXL04_005072|LXL04_005072|OH1004|PROTEIN

MAARTLIPSPPLSLLPGRGATTTVSCWKPTSRVGGERILRVYAAAGEGGGGGGGKQRAPPGIDTRIHWENEDDGWVGGSTTQSAPEEDQTNNLLGEKFSELLNNSTDSHYQFLGVPAEADLEEIKAAYRRLSKEYHPDTTSLPLKTASEMFMRLREIYDVLSDSEKRRFYDWTLAQEAASREAEKMKVKLEDPYMKDIENFVSVPDMVDRLGGRNMELSDQAKSALTFDIFVIIFAICCIIYVVYFKEPYY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005072`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005072

Location Chr01:154245102-154245937 (+)

Description Similar to ndhT: NAD(P)H-quinone oxidoreductase subunit T, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g09350`	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain.	An Src homology 3 domain-like fold protein forms a ferredoxin binding site for the chloroplast NADH dehydrogenase-like complex in Arabidopsis.2011 · DOI: 10.1105/tpc.110.080291

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005072 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006260 DNA replication Biological Process

GO:0009408 response to heat Biological Process

GO:0042026 protein refolding Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0031072 heat shock protein binding Molecular Function

GO:0048038 quinone binding Molecular Function

GO:0051082 unfolded protein binding Molecular Function

KEGG gene cross-reference

aae:aq_703

ate:Athe_1550

ath:AT4G09350

csc:Csac_1753

hte:Hydth_1877

hth:HTH_1895

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.936

Rank 1 · LXL04_005072 · OH-1004

Nucleus0.054

Rank 2 · LXL04_005072 · OH-1004

Mitochondrion0.042

Rank 3 · LXL04_005072 · OH-1004

Cytoplasm0.023

Rank 4 · LXL04_005072 · OH-1004

Cell membrane0.018

Rank 5 · LXL04_005072 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226.37DnaJ109-171 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005072	`PF00226.37`	DnaJ	109	171	8.3e-21	74.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SMS0`	Arabidopsis thaliana	NAD(P)H-quinone oxidoreductase subunit T, chloroplastic	63.111%	Swiss-Prot	strong database homology

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