LXL04_004973 | RubberDandelionOmics

Gene overview

LXL04_004973

Reference: OH-1004 Chr: Chr01 Coordinates: 151294950-151297232 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2283 bp · LXL04_004973|LXL04_004973|OH1004|cDNA

ATGAATAATCTCTACGATACAATCTCTCTTCTCTTGATTCTATCATCGTTCTCCTTCACTTATGGGTTCGGATCCATGGGTCCTATATCGGCTGTGTTTGGCCAAAATGACTTCTTTTGTGCCATTGATGCAAGTGGGAAGCAAGAAGTTATTTGCTGGGGGAAGAACACGAGTTCGTCTTCTTCGACTTCCTCGGTGTTCGCTATTGATGTCCCGCCCATGGCAGCTTTGAGTGGAGGTTGCGGGTTTATGTGTGGCAT...

CDS

Download CDS FASTA

2283 bp · LXL04_004973|LXL04_004973|OH1004|CDS

ATGAATAATCTCTACGATACAATCTCTCTTCTCTTGATTCTATCATCGTTCTCCTTCACTTATGGGTTCGGATCCATGGGTCCTATATCGGCTGTGTTTGGCCAAAATGACTTCTTTTGTGCCATTGATGCAAGTGGGAAGCAAGAAGTTATTTGCTGGGGGAAGAACACGAGTTCGTCTTCTTCGACTTCCTCGGTGTTCGCTATTGATGTCCCGCCCATGGCAGCTTTGAGTGGAGGTTGCGGGTTTATGTGTGGCAT...

Protein

Download Protein FASTA

760 aa · LXL04_004973|LXL04_004973|OH1004|PROTEIN

MNNLYDTISLLLILSSFSFTYGFGSMGPISAVFGQNDFFCAIDASGKQEVICWGKNTSSSSSTSSVFAIDVPPMAALSGGCGFMCGILVNTSYASCWDSTGSTSDLVPQVYQSSSYSYISSGKDHVCAIRGSYYSDSDSGSVDCWDIVETSGNRFSSKQSALYYNQEISSLSFKKIVSGEGFSCGALKDGGIKCWGPTASNLGVPNLPEKLLALASGKSSVCGVLESSGEIKCWGDGDSSFSNSSILDPPIGASFVALAI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004973`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004973

Location Chr01:151294950-151297232 (-)

Description Similar to CCR1: Serine/threonine-protein kinase-like protein CCR1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g09780`	Serine/threonine-protein kinase with low activity.	No verified direct reference in this release
`At2g39180`	Serine/threonine-protein kinase with low activity.	No verified direct reference in this release
`At3g59420`	Controls formative cell division in meristems, including root tips and lateral root initiation zones of the pericycle, in response to CLE40 signal.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0637800`	Receptor protein kinase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004973 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009786 regulation of asymmetric cell division Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010311 lateral root formation Biological Process

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0048439 flower morphogenesis Biological Process

GO:0048829 root cap development Biological Process

GO:0090392 sepal giant cell differentiation Biological Process

GO:0090627 plant epidermal cell differentiation Biological Process

GO:0099402 plant organ development Biological Process

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT2G39180

ath:AT3G09780

ath:AT3G59420

dosa:Os03g0637800

zma:542346

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.734

Rank 1 · LXL04_004973 · OH-1004

Endoplasmic reticulum0.117

Rank 2 · LXL04_004973 · OH-1004

Cytoplasm0.094

Rank 3 · LXL04_004973 · OH-1004

Lysosome / Vacuole0.070

Rank 4 · LXL04_004973 · OH-1004

Nucleus0.067

Rank 5 · LXL04_004973 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase506-653 aa

PF07714.24PK_Tyr_Ser-Thr509-654 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004973	`PF00069.32`	Pkinase	506	653	1.4e-28	100.7
LXL04_004973	`PF07714.24`	PK_Tyr_Ser-Thr	509	654	1.1e-32	114.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S7D9`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein CCR1	59.318%	Swiss-Prot	strong database homology
`O80963`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein CCR2	54.688%	Swiss-Prot	strong database homology
`Q9LX29`	Arabidopsis thaliana	Serine/threonine-protein kinase-like protein ACR4	31.841%	Swiss-Prot	moderate database homology
`Q75J39`	Oryza sativa subsp. japonica	Serine/threonine-protein kinase-like protein CR4	33.291%	Swiss-Prot	moderate database homology

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