LXL04_004968 | RubberDandelionOmics

Gene overview

LXL04_004968

Reference: OH-1004 Chr: Chr01 Coordinates: 151145492-151146536 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

883 bp · LXL04_004968|LXL04_004968|OH1004|cDNA

ATGCTTAGTAGTTTCCTCCATCAACAAGAAAGCAAACAACAAAATCTTGATTTCCATGGCGAAAATCAACAACACCTCAAATTCACACATACAACTTCCTCCCGGTTTTAGATTCCACCAAACTGACGAAGAACTCATCGTTCACTATTTGCAAAGAAAAGTGATTTCAACCGCCCTCCCCGCTTCCATCCTTGCCGAAATCGAGCTTTACAAGTTCGATCCATGGGAGCTTCCATATAAGGCGTTGTTTGGAGAGGATG...

CDS

Download CDS FASTA

837 bp · LXL04_004968|LXL04_004968|OH1004|CDS

TTGATTTCCATGGCGAAAATCAACAACACCTCAAATTCACACATACAACTTCCTCCCGGTTTTAGATTCCACCAAACTGACGAAGAACTCATCGTTCACTATTTGCAAAGAAAAGTGATTTCAACCGCCCTCCCCGCTTCCATCCTTGCCGAAATCGAGCTTTACAAGTTCGATCCATGGGAGCTTCCATATAAGGCGTTGTTTGGAGAGGATGAATGGTATTTCTTTACTCCAAGAGATAGGAAGTACCCGAATGGAGT...

Protein

Download Protein FASTA

278 aa · LXL04_004968|LXL04_004968|OH1004|PROTEIN

MISMAKINNTSNSHIQLPPGFRFHQTDEELIVHYLQRKVISTALPASILAEIELYKFDPWELPYKALFGEDEWYFFTPRDRKYPNGVRPNRMAGSGYWKATGTDRPIMGSMGEDMVGVKKGLVFYKGRPPRGVKTDWIMHEYRLLDTVTCNSSKPKESMRLDDWVLCRVRQKTCNSRNFCEDYGRVSEPKKSMIVSRDTKPSFGNLKEGILKDCPMLPFMFGSHLDFSYMDNICSVSEKGRNLEGYNRKHREEEGVNDSN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004968`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004968

Location Chr01:151145492-151146536 (-)

Description Similar to NAC025: NAC transcription factor 25

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g61110`	Transcription factor of the NAC family.	A cis regulatory element in the TAPNAC promoter directs tapetal gene expression.2011 · DOI: 10.1007/s11103-010-9713-5
`At3g15510`	Transcription factor of the NAC family (Probable).	NAC family proteins NARS1/NAC2 and NARS2/NAM in the outer integument regulate embryogenesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.060160

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YMR0`	Transcription factor of the NAC family associated with male fertility.	No verified direct reference in this release
`Os07g0566500`	Transcription factor of the NAC family associated with male fertility.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004968 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009555 pollen development Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009831 plant-type cell wall modification involved in multidimensional cell growth Biological Process

GO:0010628 positive regulation of gene expression Biological Process

GO:0045995 regulation of embryonic development Biological Process

GO:0048317 seed morphogenesis Biological Process

GO:0048608 reproductive structure development Biological Process

GO:0048653 anther development Biological Process

KEGG gene cross-reference

ath:AT1G61110

ath:AT3G15510

dosa:Os07g0566500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.974

Rank 1 · LXL04_004968 · OH-1004

Cytoplasm0.070

Rank 2 · LXL04_004968 · OH-1004

Cell membrane0.030

Rank 3 · LXL04_004968 · OH-1004

Endoplasmic reticulum0.019

Rank 4 · LXL04_004968 · OH-1004

Plastid0.015

Rank 5 · LXL04_004968 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM18-144 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004968	`PF02365.21`	NAM	18	144	5.5e-46	156.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GY42`	Arabidopsis thaliana	NAC transcription factor 25	65.714%	Swiss-Prot	moderate database homology
`Q9LD44`	Arabidopsis thaliana	NAC transcription factor 56	64.286%	Swiss-Prot	moderate database homology
`A2YMR0`	Oryza sativa subsp. indica	NAC transcription factor ONAC010	60.417%	Swiss-Prot	moderate database homology
`Q8H4S4`	Oryza sativa subsp. japonica	NAC domain-containing protein 10	60.417%	Swiss-Prot	moderate database homology

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