LXL04_004947 | RubberDandelionOmics

Gene overview

LXL04_004947

Reference: OH-1004 Chr: Chr01 Coordinates: 150735418-150736936 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1032 bp · LXL04_004947|LXL04_004947|OH1004|cDNA

ATGCAACATCCCAAGCCAAGAGGTAGAACTACAGGATCTACCGGGAAACTAAAGAGTACCATCGGAGCAAATCGAGAAAACATTTCCTCCCAAAGTTCAACAGCTAACCGATCACCCCGCACTCCAGCATCCGAGAAAAAGCGTGTTGGGAGAGTATCTGAATTGGAAACCCAACTTGCACATCTTCAAGAAGAACTCAAGAAGACAAAGGATCATTTAAGTGAATCGGAATTATCTCAAAAGCGAGCGCACCGGGAAGC...

CDS

Download CDS FASTA

1032 bp · LXL04_004947|LXL04_004947|OH1004|CDS

ATGCAACATCCCAAGCCAAGAGGTAGAACTACAGGATCTACCGGGAAACTAAAGAGTACCATCGGAGCAAATCGAGAAAACATTTCCTCCCAAAGTTCAACAGCTAACCGATCACCCCGCACTCCAGCATCCGAGAAAAAGCGTGTTGGGAGAGTATCTGAATTGGAAACCCAACTTGCACATCTTCAAGAAGAACTCAAGAAGACAAAGGATCATTTAAGTGAATCGGAATTATCTCAAAAGCGAGCGCACCGGGAAGC...

Protein

Download Protein FASTA

343 aa · LXL04_004947|LXL04_004947|OH1004|PROTEIN

MQHPKPRGRTTGSTGKLKSTIGANRENISSQSSTANRSPRTPASEKKRVGRVSELETQLAHLQEELKKTKDHLSESELSQKRAHREAEDAKKQLAATLVKLEESQQQLDEIWACEESRIQELRKISQDRDRVWESELKSVQKQHEMDSAVLAATMNENQKLKIQLQKVVESENSLRLQLSESVDLVDELKARLNESNESEARALTLASQTRDQLELMVKSSTEKDAAAQLTEDADGEDEAERAVELGSALAANAEMESEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004947`
TK1151 ID	TkA01G094890
OH-1004 ID	LXL04_004947
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004947

Location Chr01:150735418-150736936 (-)

Description Similar to ICR2: Interactor of constitutive active ROPs 2, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37080`	Acts as a scaffold, mediating interaction of ROPs with different proteins.	No verified direct reference in this release
`At3g53350`	ROP effector binding specifically activated ROPs and linking them to the microtubule cytoskeleton.	Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns.2013 · DOI: 10.1105/tpc.113.117853
`At5g60210`	Acts as a scaffold, mediating interaction of ROPs with different proteins.	No verified direct reference in this release
`At1g17140`	Acts as a scaffold, mediating interaction of ROPs with different proteins.	RIP1 (ROP Interactive Partner 1)/ICR1 marks pollen germination sites and may act in the ROP1 pathway in the control of polarized pollen growth.2008 · DOI: 10.1093/mp/ssn051
`At1g78430`	Acts as a scaffold, mediating interaction of ROPs with different proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004947 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009664 plant-type cell wall organization Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005874 microtubule Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008017 microtubule binding Molecular Function

KEGG gene cross-reference

ath:AT2G37080

ath:AT3G53350

ath:AT5G60210

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.514

Rank 1 · LXL04_004947 · OH-1004

Cell membrane0.286

Rank 2 · LXL04_004947 · OH-1004

Nucleus0.268

Rank 3 · LXL04_004947 · OH-1004

Plastid0.061

Rank 4 · LXL04_004947 · OH-1004

Endoplasmic reticulum0.049

Rank 5 · LXL04_004947 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27682.1ICR5_C225-277 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004947	`PF27682.1`	ICR5_C	225	277	3.7e-09	38.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQC5`	Arabidopsis thaliana	Interactor of constitutive active ROPs 2, chloroplastic	42.562%	Swiss-Prot	moderate database homology
`Q8VYU8`	Arabidopsis thaliana	Interactor of constitutive active ROPs 5	48.936%	Swiss-Prot	weak database homology
`Q9LSS5`	Arabidopsis thaliana	Interactor of constitutive active ROPs 3	39.594%	Swiss-Prot	moderate database homology
`Q8LE98`	Arabidopsis thaliana	Interactor of constitutive active ROPs 1	29.070%	Swiss-Prot	weak database homology
`Q9M9F9`	Arabidopsis thaliana	Interactor of constitutive active ROPs 4	28.571%	Swiss-Prot	weak database homology

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