Gene Card
Gene overview
cDNA / CDS / Protein Sequences
429 bp · LXL04_004945|LXL04_004945|OH1004|cDNA
ATGGGTAAGACACATGGAATGGGAGCCGGACGCAAGCTGAAGTCCCACCGCAGGAGGCAAAGGTGGGCCGACAAATCATACAAGAAGTCTCACCTTGGTAACGAATGGAAGAAGCCATTTGCCGGTTCTTCTCACGCTAAAGGCATTGTCCTCGAGAAAATTGGTATTGAAGCTAAGCAGCCTAACTCCGCTATTAGAAAGTGTGCCAGAGTTCAACTCATCAAGAACGGAAAGAAGATTGCAGCTTTTGTCCCCAATGA...
429 bp · LXL04_004945|LXL04_004945|OH1004|CDS
ATGGGTAAGACACATGGAATGGGAGCCGGACGCAAGCTGAAGTCCCACCGCAGGAGGCAAAGGTGGGCCGACAAATCATACAAGAAGTCTCACCTTGGTAACGAATGGAAGAAGCCATTTGCCGGTTCTTCTCACGCTAAAGGCATTGTCCTCGAGAAAATTGGTATTGAAGCTAAGCAGCCTAACTCCGCTATTAGAAAGTGTGCCAGAGTTCAACTCATCAAGAACGGAAAGAAGATTGCAGCTTTTGTCCCCAATGA...
Protein
Download Protein FASTA142 aa · LXL04_004945|LXL04_004945|OH1004|PROTEIN
MGKTHGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004945 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004945 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:150727364-150728398 (-) | |||||||||
| Description | Similar to RPS23: 40S ribosomal protein S23 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0002181 cytoplasmic translation Biological Process GO:0006412 translation Biological Process GO:0005730 nucleolus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005791 rough endoplasmic reticulum Cellular Component GO:0005829 cytosol Cellular Component GO:0005840 ribosome Cellular Component GO:0005886 plasma membrane Cellular Component GO:0015935 small ribosomal subunit Cellular Component GO:0022626 cytosolic ribosome Cellular Component GO:0022627 cytosolic small ribosomal subunit Cellular Component GO:0003729 mRNA binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G09680 ath:AT5G02960 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00164.32Ribosom_S12_S2338-141 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004945 | PF00164.32 | Ribosom_S12_S23 | 38 | 141 | 3.2e-48 | 162.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.