LXL04_004922 | RubberDandelionOmics

Gene overview

LXL04_004922

Reference: OH-1004 Chr: Chr01 Coordinates: 150213195-150216277 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1938 bp · LXL04_004922|LXL04_004922|OH1004|cDNA

ATGGCTTCGCTGTGCTTCTATTCTGCTGGAAATCTCCATTACAACAATTCTCTCAACGGAACTAGACCTCTTCACATATGTAAGCAAATACGTTCCTCACAATCCACAATTATCGCCGTAATTAATTCAAATGAACCCAACGTTAGACGATCAGCAAACTATGAGCCATCTATATGGTCATTTGATCATGTTCAATCACTCTCTAACAAATACAAGGGAGAAGATTACGTGGCAAGAGCAAATACTTTAAGGGAAGTAGT...

CDS

Download CDS FASTA

1938 bp · LXL04_004922|LXL04_004922|OH1004|CDS

ATGGCTTCGCTGTGCTTCTATTCTGCTGGAAATCTCCATTACAACAATTCTCTCAACGGAACTAGACCTCTTCACATATGTAAGCAAATACGTTCCTCACAATCCACAATTATCGCCGTAATTAATTCAAATGAACCCAACGTTAGACGATCAGCAAACTATGAGCCATCTATATGGTCATTTGATCATGTTCAATCACTCTCTAACAAATACAAGGGAGAAGATTACGTGGCAAGAGCAAATACTTTAAGGGAAGTAGT...

Protein

Download Protein FASTA

645 aa · LXL04_004922|LXL04_004922|OH1004|PROTEIN

MASLCFYSAGNLHYNNSLNGTRPLHICKQIRSSQSTIIAVINSNEPNVRRSANYEPSIWSFDHVQSLSNKYKGEDYVARANTLREVVKTMIHNVGNPLSALELVDDMQRLGISYHFEDEINEVLDMIYYKYFLTDNKWSGMGLNLKALGFRLLRQHGYQVPQGDVDGGFLRQRREKLRSCTADGFVVTGAVGLMVAVMLQIEIKLSLFEYSIYAIMHAGIFGNFKDKTQDLNPNLLEDVVGMLNLYEASYHSFEGEDILD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004922`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_004922`
Location	Chr01:150213195-150216277 (-)
Description	Similar to QH5: R-linalool synthase QH5, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004922` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0009611 response to wounding Biological Process GO:0016102 diterpenoid biosynthetic process Biological Process GO:0033383 geranyl diphosphate metabolic process Biological Process GO:0046246 terpene biosynthetic process Biological Process GO:0051762 sesquiterpene biosynthetic process Biological Process GO:0009507 chloroplast Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0010333 terpene synthase activity Molecular Function GO:0010334 sesquiterpene synthase activity Molecular Function GO:0034008 R-linalool synthase activity Molecular Function GO:0050550 pinene synthase activity Molecular Function
KEGG gene cross-reference	ag:AAF13356 ag:AAF13357 ag:AAK58723 rcu:8261702 vvi:100232956 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.946

Rank 1 · LXL04_004922 · OH-1004

Cytoplasm0.110

Rank 2 · LXL04_004922 · OH-1004

Peroxisome0.059

Rank 3 · LXL04_004922 · OH-1004

Nucleus0.035

Rank 4 · LXL04_004922 · OH-1004

Mitochondrion0.030

Rank 5 · LXL04_004922 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01397.28Terpene_synth59-162 aa

PF01397.28Terpene_synth217-290 aa

PF03936.22Terpene_synth_C350-585 aa

PF19086.6Terpene_syn_C_2387-585 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004922	`PF01397.28`	Terpene_synth	59	162	2e-39	136.0
LXL04_004922	`PF01397.28`	Terpene_synth	217	290	2e-39	136.0
LXL04_004922	`PF03936.22`	Terpene_synth_C	350	585	5.3e-88	295.1
LXL04_004922	`PF19086.6`	Terpene_syn_C_2	387	585	1.3e-59	202.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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