LXL04_004902 | RubberDandelionOmics

Gene overview

LXL04_004902

Reference: OH-1004 Chr: Chr01 Coordinates: 149930702-149933003 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1347 bp · LXL04_004902|LXL04_004902|OH1004|cDNA

ATGGCGGAAAACAAAGAAATACCAGTTTCAATAGATAGCATTCCACATGAAATCTTGTACCAAATCATCTCTCTAATCCCTCTGAAAGAAGCTACAAGAACCATCATCCTTTCATCTTCATGGAAGCACTTATGGACACCAATTCAGGTGTCATTAAACATCGATTTTGATAAACTAACAACTCAAGAATGTGGTCAACACATGACCCAAATCATCTCTTCTTTCTTACACACTTACAAAACAAGTTACCAGATCCTCGA...

CDS

Download CDS FASTA

1347 bp · LXL04_004902|LXL04_004902|OH1004|CDS

ATGGCGGAAAACAAAGAAATACCAGTTTCAATAGATAGCATTCCACATGAAATCTTGTACCAAATCATCTCTCTAATCCCTCTGAAAGAAGCTACAAGAACCATCATCCTTTCATCTTCATGGAAGCACTTATGGACACCAATTCAGGTGTCATTAAACATCGATTTTGATAAACTAACAACTCAAGAATGTGGTCAACACATGACCCAAATCATCTCTTCTTTCTTACACACTTACAAAACAAGTTACCAGATCCTCGA...

Protein

Download Protein FASTA

448 aa · LXL04_004902|LXL04_004902|OH1004|PROTEIN

MAENKEIPVSIDSIPHEILYQIISLIPLKEATRTIILSSSWKHLWTPIQVSLNIDFDKLTTQECGQHMTQIISSFLHTYKTSYQILDLSLIHPKTVRNQETRFFKAIKGVNEELHICFNGERETQKAFGLTIELPLCGNGHFHSLKTLHLRSITSMAGSFLPELFSGCLNLEVLTLEKCGGLQDIDVKAHEFLKKFVVLDCENMACVTISLAPNLEFFCYRGTLVKIVLKEVPILCDVTLDFNGTSAFTNYNEFDSEDLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004902`
TK1151 ID	TkA01G098250
OH-1004 ID	LXL04_004902
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.500
Protein coverage (%)	TK1151 85.443 / OH-1004 30.134 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004902

Location Chr01:149930702-149933003 (-)

Description Similar to At2g39490: F-box protein At2g39490

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g39490`	F-box protein At2g39490.	No verified direct reference in this release
`At5g02910`	F-box/LRR-repeat protein At5g02910.	No verified direct reference in this release
`At5g03100`	F-box protein At5g03100.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004902 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005777 peroxisome Cellular Component

KEGG gene cross-reference

ath:AT2G39490

ath:AT5G02910

ath:AT5G03100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.721

Rank 1 · LXL04_004902 · OH-1004

Cytoplasm0.311

Rank 2 · LXL04_004902 · OH-1004

Cell membrane0.068

Rank 3 · LXL04_004902 · OH-1004

Endoplasmic reticulum0.054

Rank 4 · LXL04_004902 · OH-1004

Mitochondrion0.020

Rank 5 · LXL04_004902 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF1138-243 aa

PF24758.2LRR_At5g56370139-222 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004902	`PF23622.2`	LRR_At1g61320_AtMIF1	138	243	3.9e-08	33.8
LXL04_004902	`PF24758.2`	LRR_At5g56370	139	222	5.8e-06	26.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5S4V7`	Arabidopsis thaliana	F-box protein At2g39490	22.432%	Swiss-Prot	weak database homology
`Q9LYZ4`	Arabidopsis thaliana	F-box/LRR-repeat protein At5g02910	26.246%	Swiss-Prot	weak database homology
`Q501G5`	Arabidopsis thaliana	F-box protein At5g03100	27.805%	Swiss-Prot	weak database homology

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