LXL04_004900 | RubberDandelionOmics

Gene overview

LXL04_004900

Reference: OH-1004 Chr: Chr01 Coordinates: 149917266-149919566 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1116 bp · LXL04_004900|LXL04_004900|OH1004|cDNA

ATGAGTAAATATGAGGGCATGAGCGAATTCTTTCACAAGGGGAAGCCCTATTTTGGTGTTTTTTTCATTCAGTTTGGGTTCGCTGGAATGGACATCCTTTCTAAAGTCGCATTAAATGAAGGAATGAGCAATTACGTATTTGTTGTATATCGCCATGTTGTCGCCACTCTTGTCATGGCTCCTTTCGCTATTCTTTTCGACAGGAAAACACGGCCAAAAATGACTCGTTCGATTTTCCTCAAGATTATGCTTCTTGCACT...

CDS

Download CDS FASTA

1116 bp · LXL04_004900|LXL04_004900|OH1004|CDS

ATGAGTAAATATGAGGGCATGAGCGAATTCTTTCACAAGGGGAAGCCCTATTTTGGTGTTTTTTTCATTCAGTTTGGGTTCGCTGGAATGGACATCCTTTCTAAAGTCGCATTAAATGAAGGAATGAGCAATTACGTATTTGTTGTATATCGCCATGTTGTCGCCACTCTTGTCATGGCTCCTTTCGCTATTCTTTTCGACAGGAAAACACGGCCAAAAATGACTCGTTCGATTTTCCTCAAGATTATGCTTCTTGCACT...

Protein

Download Protein FASTA

371 aa · LXL04_004900|LXL04_004900|OH1004|PROTEIN

MSKYEGMSEFFHKGKPYFGVFFIQFGFAGMDILSKVALNEGMSNYVFVVYRHVVATLVMAPFAILFDRKTRPKMTRSIFLKIMLLALLEPVIDQNLYIMGLKATTATFAAAMSNVLPAITFVMACILRVEKLNIKSIYSQAKITGTVATVAGAMVMTLIKGPILELFWTRGRTYHEVATNGVDLHGSLKGAIMITVGCFSWSGFMILQSITLESYPAELSLTAWICLMGTIEGTIVALIMERGNPGVWAIKWDTSLLACV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004900`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004900

Location Chr01:149917266-149919566 (+)

Description Similar to At2g37460: WAT1-related protein At2g37460

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37460`	WAT1-related protein At2g37460.	No verified direct reference in this release
`At2g39510`	WAT1-related protein At2g39510.	No verified direct reference in this release
`At2g37450`	WAT1-related protein At2g37450.	No verified direct reference in this release
`At5g07050`	WAT1-related protein At5g07050.	No verified direct reference in this release
`At4g08290`	WAT1-related protein At4g08290.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004900 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0048316 seed development Biological Process

GO:0098712 L-glutamate import across plasma membrane Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0015186 L-glutamine transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G37450

ath:AT2G37460

ath:AT2G39510

ath:AT4G08290

ath:AT5G07050

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.516

Rank 1 · LXL04_004900 · OH-1004

Lysosome / Vacuole0.183

Rank 2 · LXL04_004900 · OH-1004

Endoplasmic reticulum0.162

Rank 3 · LXL04_004900 · OH-1004

Golgi apparatus0.067

Rank 4 · LXL04_004900 · OH-1004

Cytoplasm0.065

Rank 5 · LXL04_004900 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892.27EamA18-155 aa

PF00892.27EamA189-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004900	`PF00892.27`	EamA	18	155	9.5e-25	88.2
LXL04_004900	`PF00892.27`	EamA	189	328	9.5e-25	88.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZUS1`	Arabidopsis thaliana	WAT1-related protein At2g37460	62.983%	Swiss-Prot	strong database homology
`O80638`	Arabidopsis thaliana	WAT1-related protein At2g39510	59.394%	Swiss-Prot	strong database homology
`F4IQX1`	Arabidopsis thaliana	WAT1-related protein At2g37450	56.034%	Swiss-Prot	strong database homology
`Q9FL41`	Arabidopsis thaliana	WAT1-related protein At5g07050	48.518%	Swiss-Prot	moderate database homology
`Q9SUF1`	Arabidopsis thaliana	WAT1-related protein At4g08290	47.978%	Swiss-Prot	moderate database homology

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