LXL04_004851 | RubberDandelionOmics

Gene overview

LXL04_004851

Reference: OH-1004 Chr: Chr01 Coordinates: 148794408-148796971 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1779 bp · LXL04_004851|LXL04_004851|OH1004|cDNA

ATGGGGAATGTATGTGTATCATGTTACTCAAAGGATGGATTCTTCCAATCAATTTCACATCCATACTGGTGGTCTCGATCACCGGATTTGATCTATTACAAAGACGGAGAATTCAGCAAACAACCACCATCAATAGAAAAAGATCCGAAAGCTACTGTTACTGTCCCAATTCAGAAAACACCTCCGCGATTAGTGATCATACCCAAAAACGACACTAAACCACCGCCGCCCATACTTTCCTACCAAGAAATCAAAATAGA...

CDS

Download CDS FASTA

1779 bp · LXL04_004851|LXL04_004851|OH1004|CDS

ATGGGGAATGTATGTGTATCATGTTACTCAAAGGATGGATTCTTCCAATCAATTTCACATCCATACTGGTGGTCTCGATCACCGGATTTGATCTATTACAAAGACGGAGAATTCAGCAAACAACCACCATCAATAGAAAAAGATCCGAAAGCTACTGTTACTGTCCCAATTCAGAAAACACCTCCGCGATTAGTGATCATACCCAAAAACGACACTAAACCACCGCCGCCCATACTTTCCTACCAAGAAATCAAAATAGA...

Protein

Download Protein FASTA

592 aa · LXL04_004851|LXL04_004851|OH1004|PROTEIN

MGNVCVSCYSKDGFFQSISHPYWWSRSPDLIYYKDGEFSKQPPSIEKDPKATVTVPIQKTPPRLVIIPKNDTKPPPPILSYQEIKIDIKQSEKATSNVKNQNNVKRMLSAGLQADKVLKTKTGHLKEYYNLGQKLGHGQFGTTFLCIEKTTGKEFACKSIAKRKLLTDDDVEDVRREIEIMHHLSGHPNVVSIQGAYEDSVAVHLVMELCAGGELFDRITKKGHYSERKAADLARTIVGVIEACHSLGVMHRDLKPENFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004851`
TK1151 ID	TkA01G101260
OH-1004 ID	LXL04_004851
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 96.875 / OH-1004 20.777 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004851

Location Chr01:148794408-148796971 (+)

Description Similar to CPK1: Calcium-dependent protein kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04870`	May play a role in signal transduction pathways that involve calcium as a second messenger.	A calcium-dependent protein kinase can inhibit a calmodulin-stimulated Ca2+ pump (ACA2) located in the endoplasmic reticulum of Arabidopsis.2000 · DOI: 10.1073/pnas.97.11.6224
`At3g10660`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0788500`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`Os12g0486600`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release
`Os07g0161600`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004851 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0043067 regulation of programmed cell death Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:1900055 regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005778 peroxisomal membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT3G10660

ath:AT5G04870

dosa:Os03g0788500

dosa:Os07g0161600

dosa:Os12g0486600

osa:4342456

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.395

Rank 1 · LXL04_004851 · OH-1004

Cytoplasm0.373

Rank 2 · LXL04_004851 · OH-1004

Nucleus0.191

Rank 3 · LXL04_004851 · OH-1004

Golgi apparatus0.124

Rank 4 · LXL04_004851 · OH-1004

Endoplasmic reticulum0.088

Rank 5 · LXL04_004851 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase129-387 aa

PF07714.24PK_Tyr_Ser-Thr131-379 aa

PF13833.13EF-hand_8421-457 aa

PF12763.14EH427-494 aa

PF25825.2SAPC2_N427-494 aa

PF00036.39EF-hand_1435-461 aa

PF13499.13EF-hand_7435-494 aa

PF13405.13EF-hand_6435-463 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004851	`PF00069.32`	Pkinase	129	387	9.5e-78	261.9
LXL04_004851	`PF07714.24`	PK_Tyr_Ser-Thr	131	379	2.1e-24	86.9
LXL04_004851	`PF13833.13`	EF-hand_8	421	457	4.9e-21	75.0
LXL04_004851	`PF12763.14`	EH	427	494	4.9e-12	46.4
LXL04_004851	`PF25825.2`	SAPC2_N	427	494	4.3e-06	27.2
LXL04_004851	`PF00036.39`	EF-hand_1	435	461	9.2e-35	116.3
LXL04_004851	`PF13499.13`	EF-hand_7	435	494	3.4e-32	111.3
LXL04_004851	`PF13405.13`	EF-hand_6	435	463	2.6e-27	92.6
LXL04_004851	`PF13202.13`	EF-hand_5	435	457	3.4e-25	87.0
LXL04_004851	`PF14658.13`	EF-hand_9	437	492	1.4e-09	39.0
LXL04_004851	`PF13833.13`	EF-hand_8	450	494	4.9e-21	75.0
LXL04_004851	`PF00036.39`	EF-hand_1	470	494	9.2e-35	116.3
LXL04_004851	`PF13499.13`	EF-hand_7	504	565	3.4e-32	111.3
LXL04_004851	`PF00036.39`	EF-hand_1	508	533	9.2e-35	116.3
LXL04_004851	`PF13405.13`	EF-hand_6	508	535	2.6e-27	92.6
LXL04_004851	`PF13202.13`	EF-hand_5	510	529	3.4e-25	87.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q06850`	Arabidopsis thaliana	Calcium-dependent protein kinase 1	67.116%	Swiss-Prot	strong database homology
`Q38870`	Arabidopsis thaliana	Calcium-dependent protein kinase 2	63.116%	Swiss-Prot	strong database homology
`Q6F3A6`	Oryza sativa subsp. japonica	Calcium-dependent protein kinase 10	65.833%	Swiss-Prot	strong database homology
`Q2QQR2`	Oryza sativa subsp. japonica	Calcium-dependent protein kinase 27	75.796%	Swiss-Prot	strong database homology
`Q7XIM0`	Oryza sativa subsp. japonica	Calcium-dependent protein kinase 17	65.000%	Swiss-Prot	strong database homology

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