LXL04_004828 | RubberDandelionOmics

Gene overview

LXL04_004828

Reference: OH-1004 Chr: Chr01 Coordinates: 148259342-148262822 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2481 bp · LXL04_004828|LXL04_004828|OH1004|cDNA

ATGGCGACATACTACAATGGAAATTCAGAAATTCAAGGGGGAGATGGATTACAGACCCTAGTTCTAATGAATCCTGGATACGTTTATTACTCAGACGCCCAACAATCGCAACCGCAATCAGCTGGGAACTTCTCGTTTCTTGATTCCAATCATCCGGGAAATAATCCGGTGAGTAATCATAATCATAACCACCACAACCACCACGCAAACATGTCTCACAATCCGACACCgcaaccacaaccaccaccCTCCGGCCAGAC...

CDS

Download CDS FASTA

2481 bp · LXL04_004828|LXL04_004828|OH1004|CDS

ATGGCGACATACTACAATGGAAATTCAGAAATTCAAGGGGGAGATGGATTACAGACCCTAGTTCTAATGAATCCTGGATACGTTTATTACTCAGACGCCCAACAATCGCAACCGCAATCAGCTGGGAACTTCTCGTTTCTTGATTCCAATCATCCGGGAAATAATCCGGTGAGTAATCATAATCATAACCACCACAACCACCACGCAAACATGTCTCACAATCCGACACCGCAACCACAACCACCACCCTCCGGCCAGAC...

Protein

Download Protein FASTA

826 aa · LXL04_004828|LXL04_004828|OH1004|PROTEIN

MATYYNGNSEIQGGDGLQTLVLMNPGYVYYSDAQQSQPQSAGNFSFLDSNHPGNNPVSNHNHNHHNHHANMSHNPTPQPQPPPSGQTQQFVGIPLSASPPSSVHSQHDVSSLHAFIPRAQYMYNPVEMVAAAAPPREVTPFQQGLSLTLSSQQSRYGSQAARVTSISPTGDEGRAAGIAGGSGGSTSSASGISNNGMHNMLLNSKYLKATQEILEEVVNVGKGVLKNSDQLSKSLKAPAIGDGGSQSPVNGEGLRDESGS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004828`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004828

Location Chr01:148259342-148262822 (+)

Description Similar to BLH1: BEL1-like homeodomain protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g35940`	BEL1-like homeodomain protein 1.	No verified direct reference in this release
`At2g16400`	BEL1-like homeodomain protein 7.	No verified direct reference in this release
`At4g34610`	BEL1-like homeodomain protein 6.	No verified direct reference in this release
`At1g75410`	Transcription factor involved in the nuclear import of SHOOT MERISTEMLESS (STM).	No verified direct reference in this release
`At1g19700`	BEL1-like homeodomain protein 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004828 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006357 regulation of transcription by RNA polymerase II Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010197 polar nucleus fusion Biological Process

GO:0010201 response to continuous far red light stimulus by the high-irradiance response system Biological Process

GO:0048510 regulation of timing of transition from vegetative to reproductive phase Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G19700

ath:AT1G75410

ath:AT2G16400

ath:AT2G35940

ath:AT4G34610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.948

Rank 1 · LXL04_004828 · OH-1004

Cytoplasm0.150

Rank 2 · LXL04_004828 · OH-1004

Cell membrane0.023

Rank 3 · LXL04_004828 · OH-1004

Mitochondrion0.013

Rank 4 · LXL04_004828 · OH-1004

Endoplasmic reticulum0.012

Rank 5 · LXL04_004828 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07526.17POX200-340 aa

PF05920.18Homeobox_KN413-452 aa

PF00046.36Homeodomain420-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004828	`PF07526.17`	POX	200	340	2.5e-48	164.7
LXL04_004828	`PF05920.18`	Homeobox_KN	413	452	1.2e-19	70.6
LXL04_004828	`PF00046.36`	Homeodomain	420	452	4.9e-07	30.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJ56`	Arabidopsis thaliana	BEL1-like homeodomain protein 1	47.418%	Swiss-Prot	moderate database homology
`Q9SIW1`	Arabidopsis thaliana	BEL1-like homeodomain protein 7	54.639%	Swiss-Prot	weak database homology
`O65685`	Arabidopsis thaliana	BEL1-like homeodomain protein 6	48.023%	Swiss-Prot	weak database homology
`Q9FWS9`	Arabidopsis thaliana	BEL1-like homeodomain protein 3	51.370%	Swiss-Prot	weak database homology
`Q9FXG8`	Arabidopsis thaliana	BEL1-like homeodomain protein 10	52.857%	Swiss-Prot	weak database homology

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