Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1644 bp · LXL04_004629|LXL04_004629|OH1004|cDNA
ATGGAAAGCAATTCAGAATCTCCGCTTCTTACCTCCATCGATGGCACACAAAACGCTCACTTCGTCGGAGACATTGAACATATCCCTCCGATCAAAGGATTGAACGATTTCTTTCTCCAATTTCGCGTCGAATCAAAGGAACACTCGATCTCGCAGCTTTCTCCGTCGAGAACTCAGTCATTGCCGGTTTCTCCTTCGGAATCATGGTTAGTATTTAAAGACATATCTCACGCGGCAGGGAAGATGGCGATATGGATGAT...
1644 bp · LXL04_004629|LXL04_004629|OH1004|CDS
ATGGAAAGCAATTCAGAATCTCCGCTTCTTACCTCCATCGATGGCACACAAAACGCTCACTTCGTCGGAGACATTGAACATATCCCTCCGATCAAAGGATTGAACGATTTCTTTCTCCAATTTCGCGTCGAATCAAAGGAACACTCGATCTCGCAGCTTTCTCCGTCGAGAACTCAGTCATTGCCGGTTTCTCCTTCGGAATCATGGTTAGTATTTAAAGACATATCTCACGCGGCAGGGAAGATGGCGATATGGATGAT...
Protein
Download Protein FASTA547 aa · LXL04_004629|LXL04_004629|OH1004|PROTEIN
MESNSESPLLTSIDGTQNAHFVGDIEHIPPIKGLNDFFLQFRVESKEHSISQLSPSRTQSLPVSPSESWLVFKDISHAAGKMAIWMIPQLFAYAFNFPIAEFLQSQSKIMVMAYISAAVLIPDYFSSLHILRPSFCQCSVISYDLKLTTDVMLDLNLSIDQSDLMSEYMEDNGRKQIIIDQLYFPYLQLDFIDTCDSRFLITTDFFITSVETFTSTLMQHDQIVAGIDWSKSSNRIATVSHDRNSYVWNQEGSVWVPTLV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004629 |
|---|---|
| TK1151 ID | TkA03G043260 |
| OH-1004 ID | LXL04_004629 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 90.200 |
| Protein coverage (%) | TK1151 93.220 / OH-1004 31.810Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004629 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:141907715-141911189 (+) | |||||||||
| Description | Similar to ARPC1B: Actin-related protein 2/3 complex subunit 1B | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0007015 actin filament organization Biological Process GO:0034314 Arp2/3 complex-mediated actin nucleation Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005885 Arp2/3 protein complex Cellular Component GO:0035861 site of double-strand break Cellular Component GO:0051015 actin filament binding Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT2G30910 ath:AT2G31300 xla:379845 xla:380108 xla:444264 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24814.2WD40_Prp19210-322 aaPF25175.2Beta-prop_WDR5211-324 aaPF24807.2WD40_CDC20-Fz213-322 aaPF23414.2Beta-prop_EML_2226-325 aaPF23381.2Beta-prop_IFT122_1st265-348 aaPF25174.2Beta-prop_THOC3267-329 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004629 | PF24814.2 | WD40_Prp19 | 210 | 322 | 1.8e-06 | 28.0 |
| LXL04_004629 | PF25175.2 | Beta-prop_WDR5 | 211 | 324 | 1.6e-08 | 34.9 |
| LXL04_004629 | PF24807.2 | WD40_CDC20-Fz | 213 | 322 | 4.3e-08 | 33.5 |
| LXL04_004629 | PF23414.2 | Beta-prop_EML_2 | 226 | 325 | 5.4e-08 | 33.3 |
| LXL04_004629 | PF23381.2 | Beta-prop_IFT122_1st | 265 | 348 | 7.2e-11 | 42.7 |
| LXL04_004629 | PF25174.2 | Beta-prop_THOC3 | 267 | 329 | 8.1e-10 | 38.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.