LXL04_004584 | RubberDandelionOmics

Gene overview

LXL04_004584

Reference: OH-1004 Chr: Chr01 Coordinates: 141015904-141020531 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1074 bp · LXL04_004584|LXL04_004584|OH1004|cDNA

ATGCATGAGAACCACGAACTCACTAGGCCTAGGCTTACCCTTTTAGAACTTTTATGCTCAACCCAGGACATCACACGGCAAGCGAGTAGCGGGAAGGGAAAAGGGAAAGCGCAACTGGGGACGTGGAGTATCTCAAGAAGACGTAACACTCCAAGTGTTTATTTTACCTTATTAGCTCCCGTCGATAATAAAAACGATGTTTATATGTTCTTTTATGAACTTTTATATATGAGAAAGAAGGGTAGGACTTCGAGTCCTGA...

CDS

Download CDS FASTA

1074 bp · LXL04_004584|LXL04_004584|OH1004|CDS

ATGCATGAGAACCACGAACTCACTAGGCCTAGGCTTACCCTTTTAGAACTTTTATGCTCAACCCAGGACATCACACGGCAAGCGAGTAGCGGGAAGGGAAAAGGGAAAGCGCAACTGGGGACGTGGAGTATCTCAAGAAGACGTAACACTCCAAGTGTTTATTTTACCTTATTAGCTCCCGTCGATAATAAAAACGATGTTTATATGTTCTTTTATGAACTTTTATATATGAGAAAGAAGGGTAGGACTTCGAGTCCTGA...

Protein

Download Protein FASTA

357 aa · LXL04_004584|LXL04_004584|OH1004|PROTEIN

MHENHELTRPRLTLLELLCSTQDITRQASSGKGKGKAQLGTWSISRRRNTPSVYFTLLAPVDNKNDVYMFFYELLYMRKKGRTSSPERKFEQGSEAKQCLKYNRYHKGECTMNQRTCYKCGKPGHIATECKTGRVCYGCGSPNHIKSECPQNKGNNNQGKPTDNHPTDKKAETYKPKVRSYNMTTHEARDMYNVFNFEAFNWPTMAEIWCLFGTSHGKRVAGREKGKRNWGRGVSQEDKGRTSSPERKFEQGSEVKQCLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004584`
TK1151 ID	TkA01G132420
OH-1004 ID	LXL04_004584
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.000
Protein coverage (%)	TK1151 56.111 / OH-1004 28.291 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`LXL04_004584`
Location	Chr01:141015904-141020531 (+)
Description	Similar to gag: Gag polyprotein (Equine infectious anemia virus (strain Wyoming)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004584` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0039702 viral budding via host ESCRT complex Biological Process GO:0019013 viral nucleocapsid Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0039660 structural constituent of virion Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.516

Rank 1 · LXL04_004584 · OH-1004

Cytoplasm0.480

Rank 2 · LXL04_004584 · OH-1004

Mitochondrion0.091

Rank 3 · LXL04_004584 · OH-1004

Cell membrane0.059

Rank 4 · LXL04_004584 · OH-1004

Endoplasmic reticulum0.043

Rank 5 · LXL04_004584 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00098.29zf-CCHC115-131 aa

PF00098.29zf-CCHC134-151 aa

PF00098.29zf-CCHC274-290 aa

PF00098.29zf-CCHC293-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004584	`PF00098.29`	zf-CCHC	115	131	1.4e-24	85.7
LXL04_004584	`PF00098.29`	zf-CCHC	134	151	1.4e-24	85.7
LXL04_004584	`PF00098.29`	zf-CCHC	274	290	1.4e-24	85.7
LXL04_004584	`PF00098.29`	zf-CCHC	293	310	1.4e-24	85.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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