LXL04_004529 | RubberDandelionOmics

Gene overview

LXL04_004529

Reference: OH-1004 Chr: Chr01 Coordinates: 139305434-139306570 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

525 bp · LXL04_004529|LXL04_004529|OH1004|cDNA

atgaacttactagcttgtttgttcaatggtcttcacaacccaatAGTCTCCCTTTACGAACACCATTTCACCACCGGTAAGCTTCCTCTACTACCCCGATTCTTCAAATTCGAGATCTGTTGTTATATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAACAATGTCTTAAGGGCTATTCCTACAGAACTTAACCGAGACGAATGGATCTTAGTGTTACCTAGGGCTTTGGTGGC...

CDS

Download CDS FASTA

525 bp · LXL04_004529|LXL04_004529|OH1004|CDS

ATGAACTTACTAGCTTGTTTGTTCAATGGTCTTCACAACCCAATAGTCTCCCTTTACGAACACCATTTCACCACCGGTAAGCTTCCTCTACTACCCCGATTCTTCAAATTCGAGATCTGTTGTTATATATTTGACGGCCATAATGGATCTGCAGCTGCTATTTATACAAAGGAGAACCTATTAAACAATGTCTTAAGGGCTATTCCTACAGAACTTAACCGAGACGAATGGATCTTAGTGTTACCTAGGGCTTTGGTGGC...

Protein

Download Protein FASTA

174 aa · LXL04_004529|LXL04_004529|OH1004|PROTEIN

MNLLACLFNGLHNPIVSLYEHHFTTGKLPLLPRFFKFEICCYIFDGHNGSAAAIYTKENLLNNVLRAIPTELNRDEWILVLPRALVAEFVKTDKDFQEKVQSSGTTVTFVIVEGSVITVASVGDSRCILESADGGLYYLSADHRLECSEEERDRVIASGGEVGRLNAAGGVQVC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004529`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004529

Location Chr01:139305434-139306570 (-)

Description Similar to At1g47380: Probable protein phosphatase 2C 12

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47380`	Probable protein phosphatase 2C 12.	No verified direct reference in this release
`At1g68410`	Probable protein phosphatase 2C 15.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0567200`	Probable protein phosphatase 2C 15.	No verified direct reference in this release
`Os09g0459600`	Probable protein phosphatase 2C 69.	No verified direct reference in this release
`Os04g0449400`	Mediates the negative regulation of osmotic and salt stress tolerance through regulation of the jasmonate and abscisic acid signaling pathways and modulation of the raffinose family oligosaccharide metabolism pathway.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004529 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G47380

ath:AT1G68410

dosa:Os02g0567200

dosa:Os04g0449400

dosa:Os09g0459600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.494

Rank 1 · LXL04_004529 · OH-1004

Nucleus0.327

Rank 2 · LXL04_004529 · OH-1004

Mitochondrion0.099

Rank 3 · LXL04_004529 · OH-1004

Endoplasmic reticulum0.093

Rank 4 · LXL04_004529 · OH-1004

Cell membrane0.085

Rank 5 · LXL04_004529 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C43-164 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004529	`PF00481.27`	PP2C	43	164	1.3e-15	58.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FX08`	Arabidopsis thaliana	Probable protein phosphatase 2C 12	80.153%	Swiss-Prot	strong database homology
`Q9M9C6`	Arabidopsis thaliana	Probable protein phosphatase 2C 15	63.359%	Swiss-Prot	strong database homology
`Q6YTI2`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 15	68.702%	Swiss-Prot	strong database homology
`Q67J17`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 69	67.939%	Swiss-Prot	strong database homology
`Q7XTC7`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 40	65.649%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card