LXL04_004320 | RubberDandelionOmics

Gene overview

LXL04_004320

Reference: OH-1004 Chr: Chr01 Coordinates: 132445934-132450164 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1179 bp · LXL04_004320|LXL04_004320|OH1004|cDNA

ATGCTACCTAAAAAAAAGGCAAGGTGCAcctgttacgacccgggttggaccaactccgaaggcccggcatcTCTcgccaacaacctaccttgtcggtttaagtcgggggtgatatggttggggtgtattgggctgctagaccttacgatgccgggccttcggagttggtccaactcgggtcgtaacaaaaaaagtgcatttttttgttacgacccgggtctcgtgttcgagtcttaccaacaacctgcctcttcggagtt...

CDS

Download CDS FASTA

1179 bp · LXL04_004320|LXL04_004320|OH1004|CDS

ATGCTACCTAAAAAAAAGGCAAGGTGCACCTGTTACGACCCGGGTTGGACCAACTCCGAAGGCCCGGCATCTCTCGCCAACAACCTACCTTGTCGGTTTAAGTCGGGGGTGATATGGTTGGGGTGTATTGGGCTGCTAGACCTTACGATGCCGGGCCTTCGGAGTTGGTCCAACTCGGGTCGTAACAAAAAAAGTGCATTTTTTTGTTACGACCCGGGTCTCGTGTTCGAGTCTTACCAACAACCTGCCTCTTCGGAGTT...

Protein

Download Protein FASTA

392 aa · LXL04_004320|LXL04_004320|OH1004|PROTEIN

MLPKKKARCTCYDPGWTNSEGPASLANNLPCRFKSGVIWLGCIGLLDLTMPGLRSWSNSGRNKKSAFFCYDPGLVFESYQQPASSEFVQGYRLGCIGLLAALVRVSQTTCLRGIVQGDMVGVYWAARPFLLRPGLDQLRRPDVIRFESHQQPASAVLSKAIWLGCIGLLDLTTPGLRSWSNPGRRRQKLGTEPYDAEVSRTVPREGSGYLLELRPITTGKLRFGATPYSTIFIGVWGLRQRKIKAAYQLFLYTLLGYVFM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004320`
TK1151 ID	TkA01G172150
OH-1004 ID	LXL04_004320
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 77.903 / OH-1004 53.061 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004320

Location Chr01:132445934-132450164 (+)

Description Similar to ND4: NADH-ubiquinone oxidoreductase chain 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`AtMg00580`	Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004320 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009060 aerobic respiration Biological Process

GO:0015990 electron transport coupled proton transport Biological Process

GO:0042773 ATP synthesis coupled electron transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045271 respiratory chain complex I Cellular Component

GO:0003954 NADH dehydrogenase activity Molecular Function

GO:0008137 NADH dehydrogenase (ubiquinone) activity Molecular Function

GO:0048039 ubiquinone binding Molecular Function

KEGG gene cross-reference No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.232

Rank 1 · LXL04_004320 · OH-1004

Extracellular0.181

Rank 2 · LXL04_004320 · OH-1004

Mitochondrion0.165

Rank 3 · LXL04_004320 · OH-1004

Endoplasmic reticulum0.110

Rank 4 · LXL04_004320 · OH-1004

Nucleus0.102

Rank 5 · LXL04_004320 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00361.26Proton_antipo_M229-386 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004320	`PF00361.26`	Proton_antipo_M	229	386	3e-39	135.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P93313`	Arabidopsis thaliana	NADH-ubiquinone oxidoreductase chain 4	91.026%	Swiss-Prot	weak database homology

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