Gene Card
Gene overview
cDNA / CDS / Protein Sequences
951 bp · LXL04_004256|LXL04_004256|OH1004|cDNA
ATGGCGACACTGACAGTTCCTCCGACGCCGGTTTCTCCACACGACGACGCCGTTCGATTATATAAAGCATTCAAAGGATTTGGATGTGATACCGCGACAGTGATTAGTATTCTTGCACATCGAGATGCAACGCAACGGTCGCATATCCGGCATGAATACCGGACGATGTATTCCGATGATATTCTTAAACGTTTGTCTTCTGAACTTAGTGGCAAATTAGAGACTGCAGTTTTGCTTTGGATGCATGATCCAGCAGGAAG...
951 bp · LXL04_004256|LXL04_004256|OH1004|CDS
ATGGCGACACTGACAGTTCCTCCGACGCCGGTTTCTCCACACGACGACGCCGTTCGATTATATAAAGCATTCAAAGGATTTGGATGTGATACCGCGACAGTGATTAGTATTCTTGCACATCGAGATGCAACGCAACGGTCGCATATCCGGCATGAATACCGGACGATGTATTCCGATGATATTCTTAAACGTTTGTCTTCTGAACTTAGTGGCAAATTAGAGACTGCAGTTTTGCTTTGGATGCATGATCCAGCAGGAAG...
Protein
Download Protein FASTA316 aa · LXL04_004256|LXL04_004256|OH1004|PROTEIN
MATLTVPPTPVSPHDDAVRLYKAFKGFGCDTATVISILAHRDATQRSHIRHEYRTMYSDDILKRLSSELSGKLETAVLLWMHDPAGRDAIILKQALTKGFINLEAVTEVICSRTSSQLQTLKQIYHSTFGTYLEHDIKVQATGDHEKILLACISKPRYEGMEVDREMAAKDAKALYKAGEKKLGTDEEVFVEIFSERSRAHLVAINSFYHDMYGKSLKKAIKSETSGLFELALLTILQCAENPAKYFAKVLYKSMKGLGT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004256 |
|---|---|
| TK1151 ID | TkA01G177300 |
| OH-1004 ID | LXL04_004256 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.700 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004256 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:131185647-131187502 (+) | |||||||||
| Description | Similar to ANN5: Annexin D5 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009408 response to heat Biological Process GO:0009409 response to cold Biological Process GO:0009414 response to water deprivation Biological Process GO:0009555 pollen development Biological Process GO:0009639 response to red or far red light Biological Process GO:0009651 response to salt stress Biological Process GO:0009846 pollen germination Biological Process GO:0009860 pollen tube growth Biological Process GO:0030154 cell differentiation Biological Process GO:0042997 negative regulation of Golgi to plasma membrane protein transport Biological Process GO:0042998 positive regulation of Golgi to plasma membrane protein transport Biological Process GO:0005615 extracellular space Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G68090 cfa:403935 hsa:312 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00191.26Annexin16-79 aaPF00191.26Annexin88-151 aaPF00191.26Annexin171-236 aaPF00191.26Annexin246-311 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004256 | PF00191.26 | Annexin | 16 | 79 | 8.4e-79 | 260.3 |
| LXL04_004256 | PF00191.26 | Annexin | 88 | 151 | 8.4e-79 | 260.3 |
| LXL04_004256 | PF00191.26 | Annexin | 171 | 236 | 8.4e-79 | 260.3 |
| LXL04_004256 | PF00191.26 | Annexin | 246 | 311 | 8.4e-79 | 260.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.