Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2898 bp · LXL04_004203|LXL04_004203|OH1004|cDNA
ATGAAGAAGGCATTTGATCAAACCTTCAGAGATATTAAAAGAGGAGTAAATAAGAAAGTTCTTAAAGTTCCTTCAATAGAACAGAAGGTTCTTGATGCTACCAGCAATGAGCCATGGGGTCCTCATGGAACCCATCTTTCTGATATTGCACAAGCTTCAAAAAACTACCATGAATACCAAATGATTATGACAATAGTTTGGAAGCGCCTCAATGATACTGGGAAGAACTGGCGCCACGTCTACAAGGGTTTAACGATTCT...
2898 bp · LXL04_004203|LXL04_004203|OH1004|CDS
ATGAAGAAGGCATTTGATCAAACCTTCAGAGATATTAAAAGAGGAGTAAATAAGAAAGTTCTTAAAGTTCCTTCAATAGAACAGAAGGTTCTTGATGCTACCAGCAATGAGCCATGGGGTCCTCATGGAACCCATCTTTCTGATATTGCACAAGCTTCAAAAAACTACCATGAATACCAAATGATTATGACAATAGTTTGGAAGCGCCTCAATGATACTGGGAAGAACTGGCGCCACGTCTACAAGGGTTTAACGATTCT...
Protein
Download Protein FASTA965 aa · LXL04_004203|LXL04_004203|OH1004|PROTEIN
MKKAFDQTFRDIKRGVNKKVLKVPSIEQKVLDATSNEPWGPHGTHLSDIAQASKNYHEYQMIMTIVWKRLNDTGKNWRHVYKGLTILEYLVANGSERVIEDIREHAYQITSLSAFQYIDSTGRDQGSNVRKKSQLLVALVNDKDKIQEARDKAASSRDKLREGRNGGREEDRNGYGREREWGGEDEYRGRSTSNDGSDNGPRSRSSDRYWEDDGHHSSRGSNARVEDASPDARTDSRLEPKSSGAPPGYEDAMNATVPAD...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004203 |
|---|---|
| TK1151 ID | TkA01G185080 |
| OH-1004 ID | LXL04_004203 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004203 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:129073704-129078554 (-) | |||||||||
| Description | Similar to EPSIN3: Clathrin interactor EPSIN 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006623 protein targeting to vacuole Biological Process GO:0006897 endocytosis Biological Process GO:0007219 Notch signaling pathway Biological Process GO:0015031 protein transport Biological Process GO:0048268 clathrin coat assembly Biological Process GO:0072659 protein localization to plasma membrane Biological Process GO:0090148 membrane fission Biological Process GO:1905445 positive regulation of clathrin coat assembly Biological Process GO:0005634 nucleus Cellular Component GO:0005768 endosome Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005802 trans-Golgi network Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G59290 ath:AT5G11710 hsa:29924 mmu:13854 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01417.27ENTH25-145 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004203 | PF01417.27 | ENTH | 25 | 145 | 3.8e-47 | 160.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.