LXL04_004169 | RubberDandelionOmics

Gene overview

LXL04_004169

Reference: OH-1004 Chr: Chr01 Coordinates: 127234355-127238440 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1563 bp · LXL04_004169|LXL04_004169|OH1004|cDNA

ATGACGATCGAATCATTTCCAGGGAGTTCAGGGTACATCGATGCTGGTGTTGATAAGAAAATAACATACTTTAGCAACACATATGTATTGGGTTTAACAGTAATCGCTGGAATTGGTGGTCTTCTTTTCGGCTACGATACAGGAGTCATATCCGGAGCCCTTTTGTATATCCGTGATGATTTCAAGGCCGTTGACGAAAGTAGTTTCTTACAGGAGACGATTGTAAGCATGGCTTTAGTGGGAGCAATGATAGGGGCGGC...

CDS

Download CDS FASTA

1563 bp · LXL04_004169|LXL04_004169|OH1004|CDS

ATGACGATCGAATCATTTCCAGGGAGTTCAGGGTACATCGATGCTGGTGTTGATAAGAAAATAACATACTTTAGCAACACATATGTATTGGGTTTAACAGTAATCGCTGGAATTGGTGGTCTTCTTTTCGGCTACGATACAGGAGTCATATCCGGAGCCCTTTTGTATATCCGTGATGATTTCAAGGCCGTTGACGAAAGTAGTTTCTTACAGGAGACGATTGTAAGCATGGCTTTAGTGGGAGCAATGATAGGGGCGGC...

Protein

Download Protein FASTA

520 aa · LXL04_004169|LXL04_004169|OH1004|PROTEIN

MTIESFPGSSGYIDAGVDKKITYFSNTYVLGLTVIAGIGGLLFGYDTGVISGALLYIRDDFKAVDESSFLQETIVSMALVGAMIGAAAGGWINDAYGRKKATLLADVVFAVGSLVMAGAPDPYVLIGGRLLVGLGVGVASVTAPMYIAEAAPSEIRGGLVSTNVLMITGGQFVSYLVNLAFTETIILGRRETAACMELIHVDYPVMEVPGTWRWMLGVAAVPAIVQFLLMLLLPESPRWLYMKKSKSEAIVVLSKIYDPY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004169`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004169

Location Chr01:127234355-127238440 (+)

Description Similar to INT1: Inositol transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43330`	Vacuolar inositol-proton symporter involved in the release of myo-inositol from vacuoles.	Functional and physiological characterization of Arabidopsis INOSITOL TRANSPORTER1, a novel tonoplast-localized transporter for myo-inositol.2008 · DOI: 10.1105/tpc.107.055632
`At1g30220`	Plasma membrane inositol-proton symporter.	Arabidopsis INOSITOL TRANSPORTER2 mediates H+ symport of different inositol epimers and derivatives across the plasma membrane.2007 · DOI: 10.1104/pp.107.109033
`At2g35740`	Plasma membrane inositol-proton symporter.	Arabidopsis INOSITOL TRANSPORTER2 mediates H+ symport of different inositol epimers and derivatives across the plasma membrane.2007 · DOI: 10.1104/pp.107.109033
`At4g16480`	Plasma membrane inositol-proton symporter.	Arabidopsis INOSITOL TRANSPORTER4 mediates high-affinity H+ symport of myoinositol across the plasma membrane.2006 · DOI: 10.1104/pp.106.077123 Arabidopsis INOSITOL TRANSPORTER2 mediates H+ symport of different inositol epimers and derivatives across the plasma membrane.2007 · DOI: 10.1104/pp.107.109033

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004169 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015798 myo-inositol transport Biological Process

GO:0023052 signaling Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0005366 myo-inositol:proton symporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G30220

ath:AT2G35740

ath:AT2G43330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.396

Rank 1 · LXL04_004169 · OH-1004

Cell membrane0.215

Rank 2 · LXL04_004169 · OH-1004

Cytoplasm0.179

Rank 3 · LXL04_004169 · OH-1004

Golgi apparatus0.153

Rank 4 · LXL04_004169 · OH-1004

Endoplasmic reticulum0.122

Rank 5 · LXL04_004169 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00083.31Sugar_tr33-498 aa

PF07690.22MFS_138-447 aa

PF07690.22MFS_1307-489 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004169	`PF00083.31`	Sugar_tr	33	498	6.3e-122	408.4
LXL04_004169	`PF07690.22`	MFS_1	38	447	8e-35	121.1
LXL04_004169	`PF07690.22`	MFS_1	307	489	8e-35	121.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZR6`	Arabidopsis thaliana	Inositol transporter 1	71.940%	Swiss-Prot	strong database homology
`Q9C757`	Arabidopsis thaliana	Probable inositol transporter 2	54.247%	Swiss-Prot	moderate database homology
`Q9ZQP6`	Arabidopsis thaliana	Probable inositol transporter 3	48.518%	Swiss-Prot	moderate database homology
`O23492`	Arabidopsis thaliana	Inositol transporter 4	50.943%	Swiss-Prot	moderate database homology

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