LXL04_004085 | RubberDandelionOmics

Gene overview

LXL04_004085

Reference: OH-1004 Chr: Chr01 Coordinates: 124762997-124766429 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

543 bp · LXL04_004085|LXL04_004085|OH1004|cDNA

ATGTCTAGAAGCACGATCTTAACATTATATCTTCTGGTCTCTGTGTTATTCCTCTCGACTTTCGTGGCGAACGGAGGTCGGCCGGGAGGAAGGACGAAGGTAGCAGACGTGAAGACGAACAAGGAGGTTCAGGAACTCGGGAGGTACTCCGTGGAGGAGTACAATCGATCGGAACGAAGCCGGAAAGGTGGCGTCGGATCTCTGTCGTTCTCACAGGTGGTGTCGGCGGAGAAGCAGGTAGTGTCCGGGATCAAGTACTA...

CDS

Download CDS FASTA

543 bp · LXL04_004085|LXL04_004085|OH1004|CDS

ATGTCTAGAAGCACGATCTTAACATTATATCTTCTGGTCTCTGTGTTATTCCTCTCGACTTTCGTGGCGAACGGAGGTCGGCCGGGAGGAAGGACGAAGGTAGCAGACGTGAAGACGAACAAGGAGGTTCAGGAACTCGGGAGGTACTCCGTGGAGGAGTACAATCGATCGGAACGAAGCCGGAAAGGTGGCGTCGGATCTCTGTCGTTCTCACAGGTGGTGTCGGCGGAGAAGCAGGTAGTGTCCGGGATCAAGTACTA...

Protein

Download Protein FASTA

180 aa · LXL04_004085|LXL04_004085|OH1004|PROTEIN

MSRSTILTLYLLVSVLFLSTFVANGGRPGGRTKVADVKTNKEVQELGRYSVEEYNRSERSRKGGVGSLSFSQVVSAEKQVVSGIKYYLKIVAFSKSGISKVFEAEVVVKSWMHSKQLLNFKPSPANNSNPKFQNLKLKTESRIRRPSIRNSNDRALRLEDDVLAKEKMGSFENSKMDNTR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004085`
TK1151 ID	TkA01G204660
OH-1004 ID	LXL04_004085
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.213 / OH-1004 70.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004085

Location Chr01:124762997-124766429 (-)

Description Similar to Cysteine proteinase inhibitor B

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31980`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0350100`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`UniProt: A2XS65`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release
`Os01g0915200`	Specific inhibitor of cysteine proteinases.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004085 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005576 extracellular region Cellular Component

GO:0004869 cysteine-type endopeptidase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT2G31980

dosa:Os01g0915200

dosa:Os04g0350100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.330

Rank 1 · LXL04_004085 · OH-1004

Endoplasmic reticulum0.235

Rank 2 · LXL04_004085 · OH-1004

Cytoplasm0.193

Rank 3 · LXL04_004085 · OH-1004

Nucleus0.140

Rank 4 · LXL04_004085 · OH-1004

Cell membrane0.129

Rank 5 · LXL04_004085 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00031.28Cystatin36-108 aa

PF16845.12SQAPI39-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004085	`PF00031.28`	Cystatin	36	108	1.5e-06	29.1
LXL04_004085	`PF16845.12`	SQAPI	39	122	1.9e-16	60.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L5T9`	Arabidopsis thaliana	Cysteine proteinase inhibitor 2	44.762%	Swiss-Prot	moderate database homology
`P0C579`	Oryza sativa subsp. japonica	Cysteine proteinase inhibitor 10	47.273%	Swiss-Prot	moderate database homology
`A2XS65`	Oryza sativa subsp. indica	Cysteine proteinase inhibitor 10	47.273%	Swiss-Prot	moderate database homology
`Q5N806`	Oryza sativa subsp. japonica	Cysteine proteinase inhibitor 4	50.000%	Swiss-Prot	moderate database homology

JBrowse

View in Genome Browser

Gene Card