LXL04_004065 | RubberDandelionOmics

Gene overview

LXL04_004065

Reference: OH-1004 Chr: Chr01 Coordinates: 123853138-123855252 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1557 bp · LXL04_004065|LXL04_004065|OH1004|cDNA

ATGGTGTCAGGTTCAAACCGCGTCCAAAGCAGTGAAGCCCCTTTATGGGAAACTGGGTTGCTGAGGATGCTGTTGTTATCTCTTCGGGGAGGGTTTGAACCCGGCTGGAAGAAAATGCACAGGCTCAGAAAGAAACCCACAAACACTTTCAGATCTAAGCGCCTCCTCTCATTCTCTCTCCTCGCAATCTTCTTCGTTCTTCTCTTTTGTTTCTCCAACAAGTACACCATCAACTCCCCCTTCTTCTCAAATTCCCTAAA...

CDS

Download CDS FASTA

1557 bp · LXL04_004065|LXL04_004065|OH1004|CDS

ATGGTGTCAGGTTCAAACCGCGTCCAAAGCAGTGAAGCCCCTTTATGGGAAACTGGGTTGCTGAGGATGCTGTTGTTATCTCTTCGGGGAGGGTTTGAACCCGGCTGGAAGAAAATGCACAGGCTCAGAAAGAAACCCACAAACACTTTCAGATCTAAGCGCCTCCTCTCATTCTCTCTCCTCGCAATCTTCTTCGTTCTTCTCTTTTGTTTCTCCAACAAGTACACCATCAACTCCCCCTTCTTCTCAAATTCCCTAAA...

Protein

Download Protein FASTA

518 aa · LXL04_004065|LXL04_004065|OH1004|PROTEIN

MVSGSNRVQSSEAPLWETGLLRMLLLSLRGGFEPGWKKMHRLRKKPTNTFRSKRLLSFSLLAIFFVLLFCFSNKYTINSPFFSNSLKPTRIPQCLKRDLAQSLNGQKFLWYAPHSGFSNQLSEFKNAVLLSAILNRTLIIPPVLDHHAVVLGSCPKFRVSEPKELRFAVWNHAIQLIQSRRYVSMADIIDLSSLVSDSAIKVIDFRNFISQFCDIDFNYLCVKDSRTEDSFLEKLRQCGSLLSGYNTDLNDCVYGVEEDC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004065`
TK1151 ID	TkA01G207930
OH-1004 ID	LXL04_004065
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 99.793 / OH-1004 92.857 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004065

Location Chr01:123853138-123855252 (+)

Description Similar to OFUT30: O-fucosyltransferase 30

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g17430`	O-fucosyltransferase 30.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004065 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0016020 membrane Cellular Component

GO:0016757 glycosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT4G17430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.570

Rank 1 · LXL04_004065 · OH-1004

Endoplasmic reticulum0.221

Rank 2 · LXL04_004065 · OH-1004

Cytoplasm0.095

Rank 3 · LXL04_004065 · OH-1004

Cell membrane0.094

Rank 4 · LXL04_004065 · OH-1004

Nucleus0.069

Rank 5 · LXL04_004065 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250.16O-FucT108-384 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004065	`PF10250.16`	O-FucT	108	384	1.6e-07	32.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q1JPM5`	Arabidopsis thaliana	O-fucosyltransferase 30	56.416%	Swiss-Prot	strong database homology

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