Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2787 bp · LXL04_004060|LXL04_004060|OH1004|cDNA
ATGGTTAGTGGGAATATTTTCCATTTTAGAAAGAATTCATGGCCTCCTGAGGAATATATAAATCGGACGACACTGCAACTGCTTGATTTTGATAGCGGTGCACCTCCTGAACAAGCATGGAGAAGGAAGTTAAACACCCATGCCAGTATTCTCAAGGAATTCAGCATTACTTTCAAGGAAGCAATAAAAATGATCACTCTTGGAATACGATTGTGGTCATATGTAAGAGAAGAAGCCTCTCATGGAAGGAGAGCACCCAT...
2787 bp · LXL04_004060|LXL04_004060|OH1004|CDS
ATGGTTAGTGGGAATATTTTCCATTTTAGAAAGAATTCATGGCCTCCTGAGGAATATATAAATCGGACGACACTGCAACTGCTTGATTTTGATAGCGGTGCACCTCCTGAACAAGCATGGAGAAGGAAGTTAAACACCCATGCCAGTATTCTCAAGGAATTCAGCATTACTTTCAAGGAAGCAATAAAAATGATCACTCTTGGAATACGATTGTGGTCATATGTAAGAGAAGAAGCCTCTCATGGAAGGAGAGCACCCAT...
Protein
Download Protein FASTA928 aa · LXL04_004060|LXL04_004060|OH1004|PROTEIN
MVSGNIFHFRKNSWPPEEYINRTTLQLLDFDSGAPPEQAWRRKLNTHASILKEFSITFKEAIKMITLGIRLWSYVREEASHGRRAPIDPFNREGKPLASQGVPLGGMGSGSITRGFRGEFRQFQILPGTCEASPVMANQFSIFISREGGQKKYASVLSPGQHEGIGKCTDQGLSSWGWNLSGQHSTYHALFPRAWTVYDGEPDPELKVSCRQISPFLPHNYRDSSLPTAVFVYTLVNTGKERAQVSLLLTWANSIGGVSH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004060 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004060 |
|---|---|
| Location | Chr01:123755524-123760169 (-) |
| Description | Similar to Gba2: Non-lysosomal glucosylceramidase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006680 glucosylceramide catabolic process Biological Process GO:0008203 cholesterol metabolic process Biological Process GO:0008206 bile acid metabolic process Biological Process GO:0009247 glycolipid biosynthetic process Biological Process GO:0016139 glycoside catabolic process Biological Process GO:0030833 regulation of actin filament polymerization Biological Process GO:0031113 regulation of microtubule polymerization Biological Process GO:0046479 glycosphingolipid catabolic process Biological Process GO:0097035 regulation of membrane lipid distribution Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component |
| KEGG gene cross-reference | dme:Dmel_CG33090 hsa:57704 mmu:230101 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF12215.15Glyco_hydr_116N101-420 aaPF04685.20GH116_catalytic517-878 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004060 | PF12215.15 | Glyco_hydr_116N | 101 | 420 | 9.1e-107 | 357.9 |
| LXL04_004060 | PF04685.20 | GH116_catalytic | 517 | 878 | 2.6e-161 | 537.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.