Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1401 bp · LXL04_003956|LXL04_003956|OH1004|cDNA
ATGGATTCAGATCAGGGTAAGTTGTTCATCGGTGGGATTTCATGGGAGACGTCAGAGGAGAAGCTGAAGGAGTATTTTGGTAATTATGGAGAAATTTTGCAGACGGTCGTTATGAGGGACAAGATCTCCGGCAGGCCACGCGGTTTTGGTTTCGTCGTATTTTCAGATCCTTCCGTACTTGACACTGTTCTTCAAGAAAAACACACCCTTGATGGTCGAACGGTGGAGGCTAAGAGAGCCCTATCAAGAGAGGAACAACA...
1401 bp · LXL04_003956|LXL04_003956|OH1004|CDS
ATGGATTCAGATCAGGGTAAGTTGTTCATCGGTGGGATTTCATGGGAGACGTCAGAGGAGAAGCTGAAGGAGTATTTTGGTAATTATGGAGAAATTTTGCAGACGGTCGTTATGAGGGACAAGATCTCCGGCAGGCCACGCGGTTTTGGTTTCGTCGTATTTTCAGATCCTTCCGTACTTGACACTGTTCTTCAAGAAAAACACACCCTTGATGGTCGAACGGTGGAGGCTAAGAGAGCCCTATCAAGAGAGGAACAACA...
Protein
Download Protein FASTA466 aa · LXL04_003956|LXL04_003956|OH1004|PROTEIN
MDSDQGKLFIGGISWETSEEKLKEYFGNYGEILQTVVMRDKISGRPRGFGFVVFSDPSVLDTVLQEKHTLDGRTVEAKRALSREEQQVSKAGNPNAGRSFGGGGGGGGGGGGGTRTKKIFVGGLPPTLSEEGFRQYFEAYGQVTDVVVMYDQQTNRPRGFGFISFDSEDAVDRVLHKTFHDLNGKQVEVKRALPKDANPGGSSGGSGRSMAGGGGGGYQGYNPSGGNLGSYESRMDSNRYMQQQSQSGGGGGGGGGGGGG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003956 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003956 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:117738282-117740335 (+) | |||||||||
| Description | Similar to RNP1: Heterogeneous nuclear ribonucleoprotein 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006397 mRNA processing Biological Process GO:0006417 regulation of translation Biological Process GO:0008380 RNA splicing Biological Process GO:0009725 response to hormone Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0051028 mRNA transport Biological Process GO:1901000 regulation of response to salt stress Biological Process GO:2000070 regulation of response to water deprivation Biological Process GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G58470 ath:AT4G14300 hsa:4440 mmu:17690 rno:259272 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF16367.12RRM_77-69 aaPF00076.29RRM_18-74 aaPF23085.2RRM_PARP14_3116-190 aaPF16367.12RRM_7117-185 aaPF00076.29RRM_1119-177 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_003956 | PF16367.12 | RRM_7 | 7 | 69 | 8.2e-15 | 55.3 |
| LXL04_003956 | PF00076.29 | RRM_1 | 8 | 74 | 7.6e-32 | 109.7 |
| LXL04_003956 | PF23085.2 | RRM_PARP14_3 | 116 | 190 | 1.3e-12 | 48.4 |
| LXL04_003956 | PF16367.12 | RRM_7 | 117 | 185 | 8.2e-15 | 55.3 |
| LXL04_003956 | PF00076.29 | RRM_1 | 119 | 177 | 7.6e-32 | 109.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.