Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1605 bp · LXL04_003863|LXL04_003863|OH1004|cDNA
ATGTCTCTGCGGGTACTAAACCCTAATGCCGAAGTGCTTAACAAATCTGCTGCACTTCACATGAACATCAATGCCGCTAAGGGTTTACAAGATGTTCTCAAGAGTAACCTCGGCCCCAAAGGCACAATAAAGATGCTTGTTGGAGGAGCTGGAGACATCAAGTTAACCAAGGATGGAAACACTTTGTTGAAAGAGATGCAAATTCAAAACCCTACCGCGATCATGATTGCAAGGACAGCTGTTGCACAAGATGATATTAG...
1605 bp · LXL04_003863|LXL04_003863|OH1004|CDS
ATGTCTCTGCGGGTACTAAACCCTAATGCCGAAGTGCTTAACAAATCTGCTGCACTTCACATGAACATCAATGCCGCTAAGGGTTTACAAGATGTTCTCAAGAGTAACCTCGGCCCCAAAGGCACAATAAAGATGCTTGTTGGAGGAGCTGGAGACATCAAGTTAACCAAGGATGGAAACACTTTGTTGAAAGAGATGCAAATTCAAAACCCTACCGCGATCATGATTGCAAGGACAGCTGTTGCACAAGATGATATTAG...
Protein
Download Protein FASTA534 aa · LXL04_003863|LXL04_003863|OH1004|PROTEIN
MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQAERCIDEGMHPRVVVDGFEIAKRATLEFLEKFKTRVVMGDGPDREMLKMVARTTLRTKLYESLADQLTDIVVNAVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRRAENCHILTCNVSLEYEKSEINSGFFYSNAEQRE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_003863 |
|---|---|
| TK1151 ID | TkA01G252280 |
| OH-1004 ID | LXL04_003863 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 99.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_003863 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:110703247-110705981 (+) | |||||||||
| Description | Similar to CCT6A: T-complex protein 1 subunit zeta 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006457 protein folding Biological Process GO:0007339 binding of sperm to zona pellucida Biological Process GO:0010043 response to zinc ion Biological Process GO:0032212 positive regulation of telomere maintenance via telomerase Biological Process GO:0050821 protein stabilization Biological Process GO:1904851 positive regulation of establishment of protein localization to telomere Biological Process GO:1904871 positive regulation of protein localization to Cajal body Biological Process GO:1904874 positive regulation of telomerase RNA localization to Cajal body Biological Process GO:0001669 acrosomal vesicle Cellular Component GO:0002199 zona pellucida receptor complex Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G02530 ath:AT5G16070 bta:521540 hsa:908 mmu:12466 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00118.30Cpn60_TCP129-527 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_003863 | PF00118.30 | Cpn60_TCP1 | 29 | 527 | 1.3e-168 | 562.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.