LXL04_003763 | RubberDandelionOmics

Gene overview

LXL04_003763

Reference: OH-1004 Chr: Chr01 Coordinates: 99893458-99894546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

450 bp · LXL04_003763|LXL04_003763|OH1004|cDNA

ATGGCTCCCTCGTTAAATCTCAAGACATTGACTCCAAATCTGCAGCCAATAAAAACCCAACACCTCATTGATGAAATTTTCATGCACTACAAGAAACAAGAGGTATTAAGTTGTATTTCACAACCATACATGTCAAAACAACATGACATAACTGATAGAATGAGAGGCATTCTCATTGATTGGCTAGATGAGGTTCATTACAAATTTGAACTGGAACGTCAAACAGGAGAAGGAAATGGCGAGTACCCTTCAGTTAACTC...

CDS

Download CDS FASTA

450 bp · LXL04_003763|LXL04_003763|OH1004|CDS

ATGGCTCCCTCGTTAAATCTCAAGACATTGACTCCAAATCTGCAGCCAATAAAAACCCAACACCTCATTGATGAAATTTTCATGCACTACAAGAAACAAGAGGTATTAAGTTGTATTTCACAACCATACATGTCAAAACAACATGACATAACTGATAGAATGAGAGGCATTCTCATTGATTGGCTAGATGAGGTTCATTACAAATTTGAACTGGAACGTCAAACAGGAGAAGGAAATGGCGAGTACCCTTCAGTTAACTC...

Protein

Download Protein FASTA

149 aa · LXL04_003763|LXL04_003763|OH1004|PROTEIN

MAPSLNLKTLTPNLQPIKTQHLIDEIFMHYKKQEVLSCISQPYMSKQHDITDRMRGILIDWLDEVHYKFELERQTGEGNGEYPSVNSFCPYPICFYQESSERASETNSGSQTVMIATICKTASHQQHDEELDVLSASVEKDWILRMQES

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003763`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003763

Location Chr01:99893458-99894546 (-)

Description Similar to CYCB2-4: Cyclin-B2-4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g76310`	Cyclin-B2-4.	No verified direct reference in this release
`At1g20610`	Cyclin-B2-3.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os06g0726800`	Involved in the control of the cell cycle at the G2/M (mitosis) transition.	No verified direct reference in this release
`UniProt: A2YH60`	Involved in the control of the cell cycle at the G2/M (mitosis) transition.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_003763 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000082 G1/S transition of mitotic cell cycle Biological Process

GO:0010332 response to gamma radiation Biological Process

GO:0044772 mitotic cell cycle phase transition Biological Process

GO:0051301 cell division Biological Process

GO:0000307 cyclin-dependent protein kinase holoenzyme complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity Molecular Function

KEGG gene cross-reference

ath:AT1G20610

ath:AT1G76310

dosa:Os06g0726800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.497

Rank 1 · LXL04_003763 · OH-1004

Cytoplasm0.423

Rank 2 · LXL04_003763 · OH-1004

Mitochondrion0.119

Rank 3 · LXL04_003763 · OH-1004

Cell membrane0.068

Rank 4 · LXL04_003763 · OH-1004

Endoplasmic reticulum0.046

Rank 5 · LXL04_003763 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00134.29Cyclin_N25-75 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003763	`PF00134.29`	Cyclin_N	25	75	1.1e-10	42.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SFW6`	Arabidopsis thaliana	Cyclin-B2-4	54.098%	Swiss-Prot	weak database homology
`Q9LDM4`	Arabidopsis thaliana	Cyclin-B2-3	45.205%	Swiss-Prot	weak database homology
`Q0D9C7`	Oryza sativa subsp. japonica	Cyclin-B2-2	58.491%	Swiss-Prot	weak database homology
`A2YH60`	Oryza sativa subsp. indica	Cyclin-B2-2	58.491%	Swiss-Prot	weak database homology

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